RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CFAP221Q4G0U5 840 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 LACTB2Q53H82 288 aaPredicted RBP5.06□□□□□ -1.6
USP40-213ENST00000483216 FASTKD1Q53R41 847 aaKnown RBP5.06□□□□□ -1.6
USP40-213ENST00000483216 CMPK2Q5EBM0 449 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 PPP1R42Q7Z4L9 355 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 HOOK3Q86VS8 718 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 RNF10Q8N5U6 811 aaKnown RBP5.06□□□□□ -1.6
USP40-213ENST00000483216 CAMKVQ8NCB2 501 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 SLC37A3Q8NCC5 494 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 OR8K1Q8NGG5 319 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 CCDC26Q8TAB7 109 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 CENPTQ96BT3 561 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 RBM4BQ9BQ04 359 aaKnown RBP5.06□□□□□ -1.6
USP40-213ENST00000483216 NAA11Q9BSU3 229 aaPredicted RBP5.06□□□□□ -1.6
USP40-213ENST00000483216 DGCR6LQ9BY27 220 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 FAM129AQ9BZQ8 928 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 TRIM7Q9C029 511 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 WWTR1Q9GZV5 400 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 ABCC6O95255 1503 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 PHLPP1O60346 1717 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 A0A1W2PR80 420 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 GMNCA6NCL1 334 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 KPNA7A9QM74 516 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 SNURFLB1AK76 121 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 DIAPH2O60879 1101 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 SORBS2O94875 1100 aaKnown RBP5.05□□□□□ -1.6
USP40-213ENST00000483216 GSRP00390 522 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 EIF2S2P20042 333 aaKnown RBP5.05□□□□□ -1.6
USP40-213ENST00000483216 HLA-FP30511 346 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 HSD17B3P37058 310 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 MAGEA8P43361 318 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 DNA2P51530 1060 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 NDUFA8P51970 172 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 VSNL1P62760 191 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 TNNC1P63316 161 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 CYCSP99999 105 aaKnown RBP5.05□□□□□ -1.6
USP40-213ENST00000483216 RASGEF1BQ0VAM2 473 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 TEFQ10587 303 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 ILF2Q12905 390 aaKnown RBP5.05□□□□□ -1.6
USP40-213ENST00000483216 ITIH4Q14624 930 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 E2F5Q15329 346 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 LRRC23Q53EV4 343 aaPredicted RBP5.05□□□□□ -1.6
USP40-213ENST00000483216 ODF2Q5BJF6 829 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 C1orf141Q5JVX7 400 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 KRTAP5-11Q6L8G4 156 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 CYB5D1Q6P9G0 228 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 FAM89BQ8N5H3 189 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 KLHDC1Q8N7A1 406 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 NECAB1Q8N987 351 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 VPS33AQ96AX1 596 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 ZNF486Q96H40 463 aaPredicted RBP5.05□□□□□ -1.6
USP40-213ENST00000483216 RMDN2Q96LZ7 410 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 IWS1Q96ST2 819 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 NAP1L3Q99457 506 aaPredicted RBP5.05□□□□□ -1.6
USP40-213ENST00000483216 EGFL8Q99944 293 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 EDEM3Q9BZQ6 932 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 FAM192AQ9GZU8 254 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 OR10A4Q9H209 315 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 LZTFL1Q9NQ48 299 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 CCDC177Q9NQR7 707 aaPredicted RBP5.05□□□□□ -1.6
USP40-213ENST00000483216 SIPA1L3O60292 1781 aaPredicted RBP5.05□□□□□ -1.6
USP40-213ENST00000483216 PXDNQ92626 1479 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 AK9Q5TCS8 1911 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 ADAMTS7Q9UKP4 1686 aa5.05□□□□□ -1.6
USP40-213ENST00000483216 CARMIL3Q8ND23 1372 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 TUBGCP6Q96RT7 1819 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 RGPD5Q99666 1765 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 SH3TC1Q8TE82 1336 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 MYH15Q9Y2K3 1946 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 BICDL2A1A5D9 508 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 CCDC188H7C350 402 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 RECQL5O94762 991 aaPredicted RBP5.04□□□□□ -1.6
USP40-213ENST00000483216 ATP1B1P05026 303 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 RHOXF2BP0C7M4 288 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 ZSCAN5DPP0CG00 497 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 PRKAR1AP10644 381 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 ZNF18P17022 549 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 PEX19P40855 299 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 MDH1P40925 334 aaKnown RBP5.04□□□□□ -1.6
USP40-213ENST00000483216 LBX1P52954 281 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 HYAL4Q2M3T9 481 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 KRBOX4Q5JUW0 171 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 AGBL2Q5U5Z8 902 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 RESP18Q5W5W9 173 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 LRRTM1Q86UE6 522 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 ANKRD13CQ8N6S4 541 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 DRAXINQ8NBI3 349 aaPredicted RBP5.04□□□□□ -1.6
USP40-213ENST00000483216 ZNF519Q8TB69 540 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 PIK3R3Q92569 461 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 C18orf12Q96KH6 178 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 CNDP2Q96KP4 475 aaKnown RBP5.04□□□□□ -1.6
USP40-213ENST00000483216 ZNF300Q96RE9 604 aaPredicted RBP5.04□□□□□ -1.6
USP40-213ENST00000483216 ATOH8Q96SQ7 321 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 TSC22D3Q99576 134 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 CDCA3Q99618 268 aaPredicted RBP5.04□□□□□ -1.6
USP40-213ENST00000483216 VGLL1Q99990 258 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 RHOXF2Q9BQY4 288 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 CABLES2Q9BTV7 478 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 CENPHQ9H3R5 247 aa5.04□□□□□ -1.6
USP40-213ENST00000483216 FZD8Q9H461 694 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms