RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 CT45A8P0DMV1 189 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 CT45A9P0DMV2 189 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 GLRA1P23415 457 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 ACP1P24666 158 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 MMP12P39900 470 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 CLK1P49759 484 aaKnown RBP5.07□□□□□ -1.6
VPS50-212ENST00000476413 HNRNPFP52597 415 aaKnown RBP5.07□□□□□ -1.6
VPS50-212ENST00000476413 MEF2DQ14814 521 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 CT45A2Q5DJT8 189 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 CAPN13Q6MZZ7 669 aaPredicted RBP5.07□□□□□ -1.6
VPS50-212ENST00000476413 NEK5Q6P3R8 708 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 RFPL4BQ6ZWI9 263 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 WDR49Q8IV35 697 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 CCNYQ8ND76 341 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 C8orf46Q8TAG6 207 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 CHURC1Q8WUH1 139 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 KRT12Q99456 494 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 AGPAT1Q99943 283 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 GPN1Q9HCN4 374 aaPredicted RBP5.07□□□□□ -1.6
VPS50-212ENST00000476413 DDX28Q9NUL7 540 aaKnown RBP5.07□□□□□ -1.6
VPS50-212ENST00000476413 ACOXLQ9NUZ1 547 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 PLEK2Q9NYT0 353 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 CSNK1G3Q9Y6M4 447 aa5.07□□□□□ -1.6
VPS50-212ENST00000476413 KRT87PA6NCN2 255 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 A8MU76 341 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 LRP3O75074 770 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 GMNNO75496 209 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 CALCAP01258 141 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 IGLV1-44P01699 117 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 CXCL10P02778 98 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 FERP16591 822 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 IL10P22301 178 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 GPX3P22352 226 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 FCARP24071 287 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 SFNP31947 248 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 CD86P42081 329 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 ATXN3P54252 364 aaPredicted RBP5.06□□□□□ -1.6
VPS50-212ENST00000476413 HERV-K104P63124 156 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 TMEM187Q14656 261 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 HEPACAMQ14CZ8 416 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 SGSM1Q2NKQ1 1148 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 CES4AQ5XG92 561 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 MFSD7Q6UXD7 560 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 ELMOD2Q8IZ81 293 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 BATF2Q8N1L9 274 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 HDDC3Q8N4P3 179 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 ADAD2Q8NCV1 583 aaKnown RBP5.06□□□□□ -1.6
VPS50-212ENST00000476413 OR5M9Q8NGP3 310 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 OR4L1Q8NH43 312 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 RPLP0P6Q8NHW5 317 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 GANCQ8TET4 914 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 ATP8B4Q8TF62 1192 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 MRPL38Q96DV4 380 aaKnown RBP5.06□□□□□ -1.6
VPS50-212ENST00000476413 CNRIP1Q96F85 164 aaPredicted RBP5.06□□□□□ -1.6
VPS50-212ENST00000476413 GPR137Q96N19 417 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 RUNDC3BQ96NL0 473 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 RBM4Q9BWF3 364 aaKnown RBP5.06□□□□□ -1.6
VPS50-212ENST00000476413 MTHFD2LQ9H903 347 aaPredicted RBP5.06□□□□□ -1.6
VPS50-212ENST00000476413 C3orf14Q9HBI5 128 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 TECRQ9NZ01 308 aaKnown RBP5.06□□□□□ -1.6
VPS50-212ENST00000476413 KLHL8Q9P2G9 620 aaPredicted RBP5.06□□□□□ -1.6
VPS50-212ENST00000476413 SPASTQ9UBP0 616 aa5.06□□□□□ -1.6
VPS50-212ENST00000476413 PIN4Q9Y237 131 aaKnown RBP5.06□□□□□ -1.6
VPS50-212ENST00000476413 RNF123Q5XPI4 1314 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 IGHV3-20A0A0C4DH32 117 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 RNF103-CHMP3A0A140T963 221 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 SHISA7A6NL88 538 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 B4GAT1O43505 415 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 PRPSAP2O60256 369 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 ZNF821O75541 412 aaPredicted RBP5.05□□□□□ -1.6
VPS50-212ENST00000476413 TXNDC12O95881 172 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 GIFP27352 417 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 KCNK10P57789 538 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 DRP2Q13474 957 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 GAMTQ14353 236 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 KRT31Q15323 416 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 OR1C1Q15619 314 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 WSCD2Q2TBF2 565 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 HLA-BQ31612 363 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 ZCCHC12Q6PEW1 402 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 GET4Q7L5D6 327 aaPredicted RBP5.05□□□□□ -1.6
VPS50-212ENST00000476413 MIER3Q7Z3K6 550 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 ELMOD1Q8N336 334 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 CCDC197Q8NCU1 140 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 ESAMQ96AP7 390 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 JPH2Q9BR39 696 aaPredicted RBP5.05□□□□□ -1.6
VPS50-212ENST00000476413 C1orf21Q9H246 121 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 CXXC4Q9H2H0 198 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 S100A14Q9HCY8 104 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 KCNN3Q9UGI6 736 aa5.05□□□□□ -1.6
VPS50-212ENST00000476413 NPC1L1Q9UHC9 1359 aa5.04□□□□□ -1.6
VPS50-212ENST00000476413 SH3PXD2BA1X283 911 aa5.04□□□□□ -1.6
VPS50-212ENST00000476413 K7EQD1 137 aa5.04□□□□□ -1.6
VPS50-212ENST00000476413 IKBKBO14920 756 aa5.04□□□□□ -1.6
VPS50-212ENST00000476413 OGTO15294 1046 aa5.04□□□□□ -1.6
VPS50-212ENST00000476413 EDIL3O43854 480 aa5.04□□□□□ -1.6
VPS50-212ENST00000476413 NXPH2O95156 264 aa5.04□□□□□ -1.6
VPS50-212ENST00000476413 EZRP15311 586 aaKnown RBP5.04□□□□□ -1.6
VPS50-212ENST00000476413 MAPK3P27361 379 aaPredicted RBP5.04□□□□□ -1.6
VPS50-212ENST00000476413 GPR183P32249 361 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms