RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZDHHC24Q6UX98 284 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 CLNKQ7Z7G1 428 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 SPPL2CQ8IUH8 684 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 CTAGE3PQ8IX95 158 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 ZNF595Q8IYB9 648 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 ANP32BQ92688 251 aaKnown RBP17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 EXT2Q93063 718 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 NCLNQ969V3 563 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 VMP1Q96GC9 406 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 SERINC2Q96SA4 455 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 ALG9Q9H6U8 611 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 PRDM7Q9NQW5 492 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 DAPP1Q9UN19 280 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 TMEM200CA6NKL6 621 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 CLDN4O14493 209 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 ANKRD17O75179 2603 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 TFEBP19484 476 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 HPDP32754 393 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 SPRP35270 261 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 PLTPP55058 493 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 MTTPP55157 894 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 SLMAPQ14BN4 828 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 EFTUD2Q15029 972 aaKnown RBP eCLIP17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 TBCCQ15814 346 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 ZNF793Q6ZN11 406 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 FGD2Q7Z6J4 655 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 UBE3DQ7Z6J8 389 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 C17orf53Q8N3J3 647 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 F2RL3Q96RI0 385 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 CD244Q9BZW8 370 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 ADAP2Q9NPF8 381 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 MRPS33Q9Y291 106 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 MEMO1Q9Y316 297 aa17.51■□□□□ 0.39
CCDC88B-206ENST00000473405 EML6Q6ZMW3 1958 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 ZNF407Q9C0G0 2248 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 CCNT2O60583 730 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 ITGA10O75578 1167 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 HTR1EP28566 365 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 TNFRSF8P28908 595 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 CASP2P42575 452 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 MAGEA4P43358 317 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 CAV1Q03135 178 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 CHIT1Q13231 466 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 CDSNQ15517 529 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 ELAVL1Q15717 326 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 GRTP1Q5TC63 336 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 C16orf47Q6ZP98 133 aaPredicted RBP17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 NCCRP1Q6ZVX7 275 aaPredicted RBP17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 LRRC70Q7Z2Q7 622 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 MDGA2Q7Z553 956 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 ISCA2Q86U28 154 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 CCDC25Q86WR0 208 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 CYP4Z2PQ8N1L4 340 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 GHDCQ8N2G8 530 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 PPM1NQ8N819 430 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 FBF1Q8TES7 1133 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 UBTD2Q8WUN7 234 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 TMEM125Q96AQ2 219 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 KCNC2Q96PR1 638 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 ATOH8Q96SQ7 321 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 MS4A8Q9BY19 250 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 COPS7BQ9H9Q2 264 aaPredicted RBP17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 IGSF5Q9NSI5 407 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 NUDT4Q9NZJ9 180 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 KCMF1Q9P0J7 381 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 FBXW2Q9UKT8 454 aa17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 KLF13Q9Y2Y9 288 aaPredicted RBP17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 UTP11Q9Y3A2 253 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-206ENST00000473405 CCDC168Q8NDH2 2452 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 KERAO60938 352 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 S100BP04271 92 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 PTGER1P34995 402 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 RFC3P40938 356 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 MSH2P43246 934 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 MEOX1P50221 254 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 IRF8Q02556 426 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 LAPTM5Q13571 262 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 ZNF630Q2M218 657 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 PAGE2BQ5JRK9 111 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 ZNF572Q7Z3I7 529 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 SULF2Q8IWU5 870 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 MCEMP1Q8IX19 187 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 POGLUT1Q8NBL1 392 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 STAG3L4Q8TBR4 150 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 ZNF473Q8WTR7 871 aaKnown RBP17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 PHF12Q96QT6 1004 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 RAB17Q9H0T7 212 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 LYRM4Q9HD34 91 aa17.49■□□□□ 0.39
CCDC88B-206ENST00000473405 MYOCOSA0A1B0GUC4 107 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 UBXN8O00124 270 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 CTNSO60931 367 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 ESRRAP11474 423 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 ABOP16442 354 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 AGAP20933 346 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 STX2P32856 288 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 GUCY2DQ02846 1103 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 PCDH1Q08174 1060 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 NAB1Q13506 487 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 XKRXQ6PP77 449 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 RAPH1Q70E73 1250 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms