RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 UCHL1P09936 223 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 TYRP14679 529 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 ACTR1BP42025 376 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 MRPL49Q13405 166 aaKnown RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 CILP2Q8IUL8 1156 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 MMAAQ8IVH4 418 aaKnown RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 MED30Q96HR3 178 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 TSSK6Q9BXA6 273 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 FAM53CQ9NYF3 392 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 WNT9AO14904 365 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 RAB3BP20337 219 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 CORO1AP31146 461 aaKnown RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 LAS2Q8IYD9 372 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 VGLL2Q8N8G2 317 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 ZNF486Q96H40 463 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 KLHL13Q9P2N7 655 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 EIF3FO00303 357 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 TACR2P21452 398 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 ANKRD54Q6NXT1 300 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 ADGRA1Q86SQ6 560 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 PELOQ9BRX2 385 aaKnown RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 WDR18Q9BV38 432 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 TPT1P8Q9HAU6 139 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 TP73O15350 636 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 PIRTP0C851 137 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 RPS5P46782 204 aaKnown RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 LUMP51884 338 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 SOX10P56693 466 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 C14orf28Q4W4Y0 310 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 CLVS2Q5SYC1 327 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 ZNF783Q6ZMS7 281 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 FAM156AQ8NDB6 213 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 GSKIPQ9P0R6 139 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 A0A1W2PPW3 197 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 SPOCK1Q08629 439 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 NPRL3Q12980 569 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 PDGFDQ9GZP0 370 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-209ENST00000472056 TUBG2Q9NRH3 451 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 ABCB8Q9NUT2 735 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 FUOMA2VDF0 154 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 PCLAFQ15004 111 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 SLC22A15Q8IZD6 547 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 OR56A3Q8NH54 315 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 SUN3Q8TAQ9 357 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 PCDHB14Q9Y5E9 798 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 LOC100509620A0A075B734 347 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 A0A0U1RQJ8 604 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 ECI2O75521 394 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 PRKACBP22694 351 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 TAS2R20P59543 309 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 CLEC12AQ5QGZ9 265 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 KCTD12Q96CX2 325 aaKnown RBP12.84□□□□□ -0.35
COL6A3-209ENST00000472056 ZNF416Q9BWM5 594 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 IRF6O14896 467 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 SLC16A5O15375 505 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 INTS5Q6P9B9 1019 aaKnown RBP12.84□□□□□ -0.35
COL6A3-209ENST00000472056 OR5B17Q8NGF7 314 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 ASB6Q9NWX5 421 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 SLC7A11Q9UPY5 501 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 GPR143P51810 404 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 GANABQ14697 944 aaKnown RBP12.84□□□□□ -0.35
COL6A3-209ENST00000472056 TNFAIP8L2Q6P589 184 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-209ENST00000472056 PROKR1Q8TCW9 393 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 DGAT2Q96PD7 388 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 GBA2Q9HCG7 927 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-209ENST00000472056 CDHR4A6H8M9 788 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 SFT2D3Q587I9 215 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 ABHD15Q6UXT9 468 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 PRRT1Q99946 306 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 J3QLW9 94 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 ZNF19P17023 458 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 C3orf49Q96BT1 292 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 METTL2AQ96IZ6 378 aaKnown RBP12.84□□□□□ -0.35
COL6A3-209ENST00000472056 MYRFLQ96LU7 910 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 MGLLQ99685 303 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 INPP5EQ9NRR6 644 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 ELOVL2Q9NXB9 296 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 DEC1Q9P2X7 70 aa12.84□□□□□ -0.35
COL6A3-209ENST00000472056 PIAS1O75925 651 aa12.83□□□□□ -0.35
COL6A3-209ENST00000472056 CD3GP09693 182 aa12.83□□□□□ -0.35
COL6A3-209ENST00000472056 RFC2P35250 354 aa12.83□□□□□ -0.35
COL6A3-209ENST00000472056 MAN2A2P49641 1150 aa12.83□□□□□ -0.35
COL6A3-209ENST00000472056 PRAMEF14Q5SWL7 426 aa12.83□□□□□ -0.35
COL6A3-209ENST00000472056 ACBD7Q8N6N7 88 aa12.83□□□□□ -0.35
COL6A3-209ENST00000472056 TEX19Q8NA77 164 aa12.83□□□□□ -0.35
COL6A3-209ENST00000472056 NMUR1Q9HB89 426 aa12.83□□□□□ -0.35
COL6A3-209ENST00000472056 ZNF226Q9NYT6 803 aa12.83□□□□□ -0.35
COL6A3-209ENST00000472056 HYKKA2RU49 373 aa12.83□□□□□ -0.36
COL6A3-209ENST00000472056 ACOT7O00154 380 aa12.83□□□□□ -0.36
COL6A3-209ENST00000472056 EOMESO95936 686 aa12.83□□□□□ -0.36
COL6A3-209ENST00000472056 RAP2BP61225 183 aa12.83□□□□□ -0.36
COL6A3-209ENST00000472056 TAGLNQ01995 201 aaKnown RBP12.83□□□□□ -0.36
COL6A3-209ENST00000472056 PLEKHS1Q5SXH7 462 aa12.83□□□□□ -0.36
COL6A3-209ENST00000472056 PARGQ86W56 976 aa12.83□□□□□ -0.36
COL6A3-209ENST00000472056 ASB3Q9Y575 518 aa12.83□□□□□ -0.36
COL6A3-209ENST00000472056 CLCA3PQ9Y6N3 262 aa12.83□□□□□ -0.36
COL6A3-209ENST00000472056 PRAMEF2O60811 474 aa12.83□□□□□ -0.36
COL6A3-209ENST00000472056 FKBP1BP68106 108 aa12.83□□□□□ -0.36
COL6A3-209ENST00000472056 ZNF460Q14592 562 aa12.83□□□□□ -0.36
COL6A3-209ENST00000472056 CREB3L2Q70SY1 520 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms