RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 CENPKQ9BS16 269 aa13.96□□□□□ -0.17
COL9A3-209ENST00000469852 EBPLQ9BY08 206 aa13.96□□□□□ -0.17
COL9A3-209ENST00000469852 SLC26A1Q9H2B4 701 aa13.96□□□□□ -0.17
COL9A3-209ENST00000469852 CCDC134Q9H6E4 229 aa13.96□□□□□ -0.17
COL9A3-209ENST00000469852 SOX17Q9H6I2 414 aaPredicted RBP13.96□□□□□ -0.17
COL9A3-209ENST00000469852 LRTM1Q9HBL6 345 aa13.96□□□□□ -0.17
COL9A3-209ENST00000469852 FBXW2Q9UKT8 454 aa13.96□□□□□ -0.17
COL9A3-209ENST00000469852 DAPP1Q9UN19 280 aa13.96□□□□□ -0.17
COL9A3-209ENST00000469852 RAXQ9Y2V3 346 aa13.96□□□□□ -0.17
COL9A3-209ENST00000469852 POLR3HQ9Y535 204 aaPredicted RBP13.96□□□□□ -0.17
COL9A3-209ENST00000469852 ASB4Q9Y574 426 aa13.96□□□□□ -0.17
COL9A3-209ENST00000469852 ACACAQ13085 2346 aa13.96□□□□□ -0.18
COL9A3-209ENST00000469852 ARHGAP10A1A4S6 786 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 VSTM2BA6NLU5 285 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 C9J4A7 227 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 SDHDO14521 159 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 POLR3GO15318 223 aaPredicted RBP13.95□□□□□ -0.18
COL9A3-209ENST00000469852 HDAC3O15379 428 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 PEX11AO75192 247 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 SEC22BO75396 215 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 BMP10O95393 424 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 ZGLP1P0C6A0 271 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 EIF2S3P41091 472 aaKnown RBP13.95□□□□□ -0.18
COL9A3-209ENST00000469852 TSFMP43897 325 aaKnown RBP13.95□□□□□ -0.18
COL9A3-209ENST00000469852 RAB38P57729 211 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 RPL38P63173 70 aaKnown RBP13.95□□□□□ -0.18
COL9A3-209ENST00000469852 ACSM2AQ08AH3 577 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 SLC9B1Q4ZJI4 515 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 RFTN2Q52LD8 501 aaPredicted RBP13.95□□□□□ -0.18
COL9A3-209ENST00000469852 ACSM2BQ68CK6 577 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 CGB2Q6NT52 195 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 MMP21Q8N119 569 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 FAM47BQ8NA70 645 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 NPLQ9BXD5 320 aaPredicted RBP13.95□□□□□ -0.18
COL9A3-209ENST00000469852 ROGDIQ9GZN7 287 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 WDR55Q9H6Y2 383 aaPredicted RBP13.95□□□□□ -0.18
COL9A3-209ENST00000469852 MEAF6Q9HAF1 191 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 MKKSQ9NPJ1 570 aaPredicted RBP13.95□□□□□ -0.18
COL9A3-209ENST00000469852 LANCL2Q9NS86 450 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 NMRK1Q9NWW6 199 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 C1orf109Q9NX04 203 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 TEX10Q9NXF1 929 aaPredicted RBP13.95□□□□□ -0.18
COL9A3-209ENST00000469852 AHSPQ9NZD4 102 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 ZNF282Q9UDV7 671 aaPredicted RBP13.95□□□□□ -0.18
COL9A3-209ENST00000469852 GPN3Q9UHW5 284 aaPredicted RBP13.95□□□□□ -0.18
COL9A3-209ENST00000469852 DLGAP4Q9Y2H0 992 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 ATG4BQ9Y4P1 393 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 USH1CQ9Y6N9 552 aa13.95□□□□□ -0.18
COL9A3-209ENST00000469852 A0A088AWK7 358 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 GOLGA8QA0A0J9YX86 632 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 GOLGA8OA6NCC3 632 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 WASHC1A8K0Z3 465 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 GOLGA8NF8WBI6 632 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 CYR61O00622 381 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 KLK10O43240 276 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 EFSO43281 561 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 PCDH7O60245 1069 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 CDC123O75794 336 aaPredicted RBP13.94□□□□□ -0.18
COL9A3-209ENST00000469852 ALBP02768 609 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 UMODP07911 640 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 RAB40ALP0C0E4 278 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 FAM58BPP0C7Q3 252 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 PRR35P0CG20 571 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 PIM1P11309 404 aaPredicted RBP13.94□□□□□ -0.18
COL9A3-209ENST00000469852 RNH1P13489 461 aaKnown RBP13.94□□□□□ -0.18
COL9A3-209ENST00000469852 ZNF10P21506 573 aaPredicted RBP13.94□□□□□ -0.18
COL9A3-209ENST00000469852 TACR1P25103 407 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 EPHA3P29320 983 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 TIA1P31483 386 aaKnown RBP eCLIP13.94□□□□□ -0.18
COL9A3-209ENST00000469852 KLC1Q07866 573 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 ITPR1Q14643 2758 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 SPIN4Q56A73 249 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 C6orf136Q5SQH8 315 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 CCNYL2Q5T2Q4 361 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 C18orf63Q68DL7 685 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 NIPAL1Q6NVV3 410 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 GALNT18Q6P9A2 607 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 PROSER1Q86XN7 944 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 LRRC34Q8IZ02 419 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 EFCAB3Q8N7B9 438 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 NBEAQ8NFP9 2946 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 TUBGCP3Q96CW5 907 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 FCRL1Q96LA6 429 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 DCBLD2Q96PD2 775 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 C1orf50Q9BV19 199 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 TGIF2Q9GZN2 237 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 ACTL8Q9H568 366 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 AKTIPQ9H8T0 292 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 GPN2Q9H9Y4 310 aaPredicted RBP13.94□□□□□ -0.18
COL9A3-209ENST00000469852 LYRM4Q9HD34 91 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 FGFR1OP2Q9NVK5 253 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 SIRT5Q9NXA8 310 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 MCM8Q9UJA3 840 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 ADAM29Q9UKF5 820 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 TCFL5Q9UL49 500 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 LHX6Q9UPM6 363 aa13.94□□□□□ -0.18
COL9A3-209ENST00000469852 FARSAQ9Y285 508 aaKnown RBP13.94□□□□□ -0.18
COL9A3-209ENST00000469852 PTRH2Q9Y3E5 179 aaKnown RBP13.94□□□□□ -0.18
COL9A3-209ENST00000469852 A0A1W2PR48 441 aa13.93□□□□□ -0.18
COL9A3-209ENST00000469852 C21orf140B9A014 251 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms