RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 PLA2G16P53816 162 aa21■□□□□ 0.95
USP4-208ENST00000464168 NUP107P57740 925 aa21■□□□□ 0.95
USP4-208ENST00000464168 TAS2R39P59534 338 aa21■□□□□ 0.95
USP4-208ENST00000464168 FRG1Q14331 258 aaKnown RBP21■□□□□ 0.95
USP4-208ENST00000464168 ELAVL1Q15717 326 aaKnown RBP21■□□□□ 0.95
USP4-208ENST00000464168 GXYLT1Q4G148 440 aa21■□□□□ 0.95
USP4-208ENST00000464168 PAOXQ6QHF9 649 aa21■□□□□ 0.95
USP4-208ENST00000464168 CLNKQ7Z7G1 428 aa21■□□□□ 0.95
USP4-208ENST00000464168 ZC3HC1Q86WB0 502 aaKnown RBP21■□□□□ 0.95
USP4-208ENST00000464168 TMEM132CQ8N3T6 1108 aa21■□□□□ 0.95
USP4-208ENST00000464168 ANKRD49Q8WVL7 239 aa21■□□□□ 0.95
USP4-208ENST00000464168 ASB15Q8WXK1 588 aa21■□□□□ 0.95
USP4-208ENST00000464168 CCT6BQ92526 530 aa21■□□□□ 0.95
USP4-208ENST00000464168 SLCO2A1Q92959 643 aa21■□□□□ 0.95
USP4-208ENST00000464168 RHBDF1Q96CC6 855 aa21■□□□□ 0.95
USP4-208ENST00000464168 NT5DC2Q9H857 520 aa21■□□□□ 0.95
USP4-208ENST00000464168 HCFC1P51610 2035 aa21■□□□□ 0.95
USP4-208ENST00000464168 NPIPA2E9PIF3 369 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 NPIPA3F8WFD2 350 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 HOXD4P09016 255 aaPredicted RBP20.99■□□□□ 0.95
USP4-208ENST00000464168 SOX3P41225 446 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 PLGLB1Q02325 96 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 BMPR2Q13873 1038 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 TSNQ15631 228 aaKnown RBP20.99■□□□□ 0.95
USP4-208ENST00000464168 ADPRMQ3LIE5 342 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 RGS9BPQ6ZS82 235 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 ACAD11Q709F0 780 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 VN1R5Q7Z5H4 357 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 OR2L5Q8NG80 312 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 PTPMT1Q8WUK0 201 aaPredicted RBP20.99■□□□□ 0.95
USP4-208ENST00000464168 SREK1Q8WXA9 508 aaKnown RBP20.99■□□□□ 0.95
USP4-208ENST00000464168 RASL10BQ96S79 203 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 CSF3RQ99062 836 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 TTTY12Q9BZ98 90 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 PNPLA3Q9NST1 481 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 CTNNAL1Q9UBT7 734 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 MRPS33Q9Y291 106 aaKnown RBP20.99■□□□□ 0.95
USP4-208ENST00000464168 CLCA3PQ9Y6N3 262 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 AKAP6Q13023 2319 aa20.99■□□□□ 0.95
USP4-208ENST00000464168 A0A088AWK7 358 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 MYOCOSA0A1B0GUC4 107 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 G3V3Y1 287 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 WWP2O00308 870 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 CTNSO60931 367 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 CLEC3AO75596 197 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 GLSO94925 669 aaPredicted RBP20.98■□□□□ 0.95
USP4-208ENST00000464168 IFNA16P05015 189 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 ZNF10P21506 573 aaPredicted RBP20.98■□□□□ 0.95
USP4-208ENST00000464168 GSTM2P28161 218 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 LIM2P55344 173 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 MORF4L2Q15014 288 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 ZNF750Q32MQ0 723 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 HSDL2Q6YN16 418 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 ADAMTSL2Q86TH1 951 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 KRT78Q8N1N4 520 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 SLC35F6Q8N357 371 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 OR5M9Q8NGP3 310 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 OR5M3Q8NGP4 307 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 LRRC39Q96DD0 335 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 SERINC2Q96SA4 455 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 PITHD1Q9GZP4 211 aaPredicted RBP20.98■□□□□ 0.95
USP4-208ENST00000464168 REXO4Q9GZR2 422 aaKnown RBP20.98■□□□□ 0.95
USP4-208ENST00000464168 KCNN3Q9UGI6 736 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 SNX12Q9UMY4 172 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 DAPP1Q9UN19 280 aa20.98■□□□□ 0.95
USP4-208ENST00000464168 FAM95CA0A1B0GW59 222 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 ACOT7O00154 380 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 PRAMEF4O60810 478 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 CD1EP15812 388 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 CERS1P27544 350 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 HK2P52789 917 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 MGAT5Q09328 741 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 PRAMEF9Q5VWM5 478 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 ADNP2Q6IQ32 1131 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 ABHD17CQ6PCB6 329 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 SLC22A16Q86VW1 577 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 ZNF321PQ8N8H1 164 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 MORN4Q8NDC4 146 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 DAZLQ92904 295 aaKnown RBP20.97■□□□□ 0.95
USP4-208ENST00000464168 ZNF559Q9BR84 538 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 ALOXE3Q9BYJ1 711 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 VTI1BQ9UEU0 232 aa20.97■□□□□ 0.95
USP4-208ENST00000464168 ZNF490Q9ULM2 529 aaPredicted RBP20.97■□□□□ 0.95
USP4-208ENST00000464168 PHF3Q92576 2039 aaKnown RBP20.96■□□□□ 0.95
USP4-208ENST00000464168 ANKDD1BA6NHY2 528 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 CES2O00748 559 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 IGHG3P01860 377 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 CNR1P21554 472 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 ACVR2AP27037 513 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 MTTPP55157 894 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 NDUFAF5Q5TEU4 345 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 TRIM40Q6P9F5 258 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 FRA10AC1Q70Z53 315 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 ANKMY2Q8IV38 441 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 SCYL1Q96KG9 808 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 FAM173AQ9BQD7 235 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 CAPS2Q9BXY5 557 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 EHD1Q9H4M9 534 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 PRDM7Q9NQW5 492 aa20.96■□□□□ 0.95
USP4-208ENST00000464168 MOCS1Q9NZB8 636 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms