RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 IQCF1Q8N6M8 205 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 Q8N9G6 341 aaPredicted RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 LINC01555Q8NAE3 123 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 ADAMTS16Q8TE57 1224 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 SLC5A11Q8WWX8 675 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 HTRA1Q92743 480 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 TIFAQ96CG3 184 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 INSM2Q96T92 566 aaPredicted RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 YTHDF1Q9BYJ9 559 aaKnown RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 KRT84Q9NSB2 600 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 TMEM74BQ9NUR3 256 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 CLDND1Q9NY35 253 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 DNAJB9Q9UBS3 223 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 TMEFF2Q9UIK5 374 aaPredicted RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 RTTNQ86VV8 2226 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 TRBV5-3A0A0A0MS03 114 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 A0A1W2PRB8 838 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 SERTM1A2A2V5 107 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 FUOMA2VDF0 154 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 PGRMC2O15173 223 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 TMPRSS11DO60235 418 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 PSIP1O75475 530 aaKnown RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 ANGPTL1O95841 491 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 FABP3P05413 133 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 HOXB6P17509 224 aaKnown RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 PRPS1L1P21108 318 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 ACSL1P33121 698 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 IDUAP35475 653 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 CLK3P49761 638 aaKnown RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 MAPK12P53778 367 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 DCDC1P59894 354 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 ADARB1P78563 741 aaKnown RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 HYAL2Q12891 473 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 AQP6Q13520 282 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 IRF4Q15306 451 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 RGNQ15493 299 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 DEFB110Q30KQ9 67 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 LRIF1Q5T3J3 769 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 C18orf63Q68DL7 685 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 VN1R5Q7Z5H4 357 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 THAP5Q7Z6K1 395 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 ADGRF3Q8IZF5 1079 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 FBXL6Q8N531 539 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 SLC5A8Q8N695 610 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 TTC29Q8NA56 475 aaPredicted RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 CHDHQ8NE62 594 aaPredicted RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 C16orf78Q8WTQ4 265 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 RSPO3Q9BXY4 272 aaPredicted RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 CXorf36Q9H7Y0 433 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 SLC28A3Q9HAS3 691 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 RYDENQ9NUL5 291 aaKnown RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 C2orf42Q9NWW7 574 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 MAN2B2Q9Y2E5 1009 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 COL4A3Q01955 1670 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 MTCL1Q9Y4B5 1905 aaKnown RBP7.98□□□□□ -1.13
CD44-208ENST00000428726 FAM220BPB1ANY3 271 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 C4orf51C9J302 202 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 M0R3H8 397 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 QSOX1O00391 747 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 PLPP1O14494 284 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 SCAMP2O15127 329 aaKnown RBP7.98□□□□□ -1.13
CD44-208ENST00000428726 ADAM23O75077 832 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 DNTTP04053 509 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 C1GALT1C1LP0DN25 315 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 MAOBP27338 520 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 EPHA5P54756 1037 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 CDK3Q00526 305 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 ZNF33BQ06732 778 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 SLC13A2Q13183 592 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 SGCGQ13326 291 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 KCNC3Q14003 757 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 LTB4RQ15722 352 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 GPR19Q15760 415 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 SYPL1Q16563 259 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 TRIM16LQ309B1 348 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 CPZQ66K79 652 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 OR2T5Q6IEZ7 315 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 ENPP7Q6UWV6 458 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 CEACAM20Q6UY09 585 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 DCDC5Q6ZRR9 648 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 USP51Q70EK9 711 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 SHFQ7M4L6 423 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 IGFN1Q86VF2 1251 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 CCDC71Q8IV32 467 aaPredicted RBP7.98□□□□□ -1.13
CD44-208ENST00000428726 GHDCQ8N2G8 530 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 METTL27Q8N6F8 245 aaPredicted RBP7.98□□□□□ -1.13
CD44-208ENST00000428726 OR2T29Q8NH02 315 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 NDNFQ8TB73 568 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 TESCQ96BS2 214 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 PDXPQ96GD0 296 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 C16orf58Q96GQ5 468 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 ZFR2Q9UPR6 939 aaKnown RBP7.98□□□□□ -1.13
CD44-208ENST00000428726 GPR179Q6PRD1 2367 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 UNC13CQ8NB66 2214 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 CFAP47Q6ZTR5 3102 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 NPIPA5A0A0B4J1W7 369 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 NPIPA7E9PJI5 369 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 BTN3A3O00478 584 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 SUV39H1O43463 412 aa7.98□□□□□ -1.13
CD44-208ENST00000428726 UGDHO60701 494 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms