RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 CDK3Q00526 305 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 CCDC92Q53HC0 331 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 ATG14Q6ZNE5 492 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 ARMCX6Q7L4S7 300 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 RNF130Q86XS8 419 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 MDGA1Q8NFP4 955 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 RNF31Q96EP0 1072 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 RTP3Q9BQQ7 232 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 SDR39U1Q9NRG7 319 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 OAZ3Q9UMX2 235 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 PPIEQ9UNP9 301 aaKnown RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 LINC00854A0A1B0GVQ3 168 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 VSTM5A8MXK1 200 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 FANCGO15287 622 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 TBX10O75333 385 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 OR2B3O76000 313 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 EFNA1P20827 205 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 HLA-FP30511 346 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 GPR143P51810 404 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 ZNF41P51814 821 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 AQP4P55087 323 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 SRP54P61011 504 aaKnown RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 TUBA3CQ13748 450 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 ABRAXAS2Q15018 415 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 PYDC2Q56P42 97 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 LHX8Q68G74 356 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 FRRS1Q6ZNA5 592 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 NANOGNBQ7Z5D8 188 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 RTN4RL1Q86UN2 441 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 OR9I1Q8NGQ6 314 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 OR5AK3PQ8NH89 298 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 ZNF395Q9H8N7 513 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 PLCL2Q9UPR0 1127 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 HSPE1-MOB4S4R3N1 261 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 LOC110117498-PIK3R3F6TDL0 507 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 ZDHHC11BP0C7U3 371 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 ERVFC1P60507 584 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 OC90Q02509 493 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 TMEM240Q5SV17 173 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 USP43Q70EL4 1123 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 SLCO6A1Q86UG4 719 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 NUP43Q8NFH3 380 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 SLC22A8Q8TCC7 542 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 PIK3R3Q92569 461 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 PIGKQ92643 395 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 ELSPBP1Q96BH3 223 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 ZIC5Q96T25 663 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 KLRF1Q9NZS2 232 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 CNOT11Q9UKZ1 510 aaKnown RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 A0A0G2JPF8 293 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 HNRNPCL3B7ZW38 293 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 HNRNPCL4P0DMR1 293 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 KDELR2P33947 212 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 IL12RB1P42701 662 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 GALK1P51570 392 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 NFATC4Q14934 902 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 UGT3A2Q3SY77 523 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 C1orf53Q5VUE5 145 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 KIAA1614Q5VZ46 1190 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 GID4Q8IVV7 300 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 OR52N2Q8NGI0 321 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 TSEN15Q8WW01 171 aaKnown RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 TMCO6Q96DC7 493 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 RPF2Q9H7B2 306 aaKnown RBP11.48□□□□□ -0.57
PTPRF-205ENST00000414879 METTL7AQ9H8H3 244 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 SP140LQ9H930 580 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 PLEKHA1Q9HB21 404 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 PALMDQ9NP74 551 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 POT1Q9NUX5 634 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 NCDNQ9UBB6 729 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 ADAM29Q9UKF5 820 aa11.48□□□□□ -0.57
PTPRF-205ENST00000414879 A0A0J9YY10 115 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 E2F3O00716 465 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 AOAHP28039 575 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 CD6P30203 668 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 MAGEA3P43357 314 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 NFE2L1Q14494 772 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 GGTA1PQ4G0N0 100 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 RNF111Q6ZNA4 994 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 OR56A3Q8NH54 315 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 GAL3ST3Q96A11 431 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 CNDP2Q96KP4 475 aaKnown RBP11.47□□□□□ -0.57
PTPRF-205ENST00000414879 PTCHD1Q96NR3 888 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 TMEM9Q9P0T7 183 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 THAP10Q9P2Z0 257 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-205ENST00000414879 ZNF821O75541 412 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-205ENST00000414879 DBIP07108 87 aaKnown RBP11.47□□□□□ -0.57
PTPRF-205ENST00000414879 GLULP15104 373 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 YAP1P46937 504 aaKnown RBP11.47□□□□□ -0.57
PTPRF-205ENST00000414879 BCAP31P51572 246 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 ZNF267Q14586 743 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-205ENST00000414879 PON3Q15166 354 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 TRNP1Q6NT89 227 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 POMZP3Q6PJE2 187 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 ADAMTSL4Q6UY14 1074 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 TOR1AIP2Q8NFQ8 470 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 OR13J1Q8NGT2 312 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 RPLP0P6Q8NHW5 317 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 TCEAL4Q96EI5 215 aa11.47□□□□□ -0.57
PTPRF-205ENST00000414879 NSUN5Q96P11 429 aaKnown RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms