RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 BLOC1S3Q6QNY0 202 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 AMZ2Q86W34 360 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 NPAS3Q8IXF0 933 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 SAMD14Q8IZD0 417 aaPredicted RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 SETD6Q8TBK2 473 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 LCN9Q8WX39 176 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 RIOK2Q9BVS4 552 aaKnown RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 NUFIP1Q9UHK0 495 aaKnown RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 FBXW2Q9UKT8 454 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 DNAJC25-GNG10A0A024R161 153 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 DUXAA6NLW8 204 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 F5H0A9 414 aaPredicted RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 PCDH17O14917 1159 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 TFAP2AP05549 437 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 ZNF865P0CJ78 1059 aaPredicted RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 DDX6P26196 483 aaKnown RBP eCLIP11.09□□□□□ -0.63
VPS39-201ENST00000318006 KCNC4Q03721 635 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 GRB7Q14451 532 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 TECRLQ5HYJ1 363 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 Q6ZVU0 165 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 TSPYL5Q86VY4 417 aaPredicted RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 DCP2Q8IU60 420 aaKnown RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 CD300LFQ8TDQ1 290 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 FCAMRQ8WWV6 532 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 HERVK_113Q902F9 699 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 TFAP2CQ92754 450 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 POPDC3Q9HBV1 291 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 AIG1Q9NVV5 245 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 BTAF1O14981 1849 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 CAPN14A8MX76 684 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 MRPS14O60783 128 aaKnown RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 RASGRP1O95267 797 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 CH25HO95992 272 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 CCL5P13501 91 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 CHMP24386 653 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 GADD45AP24522 165 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 VLDLRP98155 873 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 FPGSQ05932 587 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 RING1Q06587 406 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 SLC10A2Q12908 348 aaPredicted RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 IRAK1BP1Q5VVH5 260 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 AGAP6Q5VW22 663 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 C22orf42Q6IC83 251 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 FAM198BQ6UWH4 519 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 TPRG1Q6ZUI0 275 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 CEP97Q8IW35 865 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 TMEM151AQ8N4L1 468 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 ASB15Q8WXK1 588 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 OVCA2Q8WZ82 227 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 CMTM7Q96FZ5 175 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 AGAP4Q96P64 663 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 COPZ2Q9P299 210 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 MYH8P13535 1937 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 MYH10P35580 1976 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 A0A096LPI6 279 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 LRRC72A6NJI9 287 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 SLC31A1O15431 190 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 PPM1BO75688 479 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 IL32P24001 234 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 S100A10P60903 97 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 ST3GAL3Q11203 375 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 BAIAP2L2Q6UXY1 529 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 MBOAT1Q6ZNC8 495 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 GPRIN1Q7Z2K8 1008 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 ZNF227Q86WZ6 799 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 UMODL1-AS1Q8N2C9 162 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 NDNFQ8TB73 568 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 ZFP90Q8TF47 636 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 ARNTL2Q8WYA1 636 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 NXPE2Q96DL1 559 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 NUS1Q96E22 293 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 MKKSQ9NPJ1 570 aaPredicted RBP11.08□□□□□ -0.64
VPS39-201ENST00000318006 TDP1Q9NUW8 608 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 IL36AQ9UHA7 158 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 ZFR2Q9UPR6 939 aaKnown RBP11.08□□□□□ -0.64
VPS39-201ENST00000318006 MYH7P12883 1935 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 TJP1Q07157 1748 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 TIAM2Q8IVF5 1701 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 PROM1O43490 865 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 ETV4P43268 484 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 GATMP50440 423 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 SNTB2Q13425 540 aaKnown RBP11.08□□□□□ -0.64
VPS39-201ENST00000318006 ARFRP1Q13795 201 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 FTMTQ8N4E7 242 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 CLDN19Q8N6F1 224 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 POGLUT1Q8NBL1 392 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 C7orf57Q8NEG2 295 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 OR6C4Q8NGE1 309 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 CHPT1Q8WUD6 406 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 ZNF382Q96SR6 550 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 GON7Q9BXV9 100 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 TMEM185BQ9H7F4 350 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 PLEKHA6Q9Y2H5 1048 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 MTX2O75431 263 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 ZNF252P-AS1Q0IIN9 211 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 SCAPQ12770 1279 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 PSD4Q8NDX1 1056 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 SNAPC3Q92966 411 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 PCDHB16Q9NRJ7 776 aa11.08□□□□□ -0.64
VPS39-201ENST00000318006 QPCTLQ9NXS2 382 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms