RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 OR6C70A6NIJ9 312 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 NOTOA8MTQ0 251 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 RNF13O43567 381 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 PCDH7O60245 1069 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ARP10275 920 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 IRF2P14316 349 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 NCBP2P52298 156 aaKnown RBP eCLIP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 HNRNPFP52597 415 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 MLIPQ5VWP3 458 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SLC16A9Q7RTY1 509 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SLC9B2Q86UD5 537 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TMEM156Q8N614 296 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 DNAAF1Q8NEP3 725 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SFXN5Q8TD22 340 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 MAELQ96JY0 434 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 CUEDC1Q9NWM3 386 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 LUZP4Q9P127 313 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 EGFL7Q9UHF1 273 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 RNF150Q9ULK6 438 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 PATJQ8NI35 1801 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TEX13DA0A0J9YY54 714 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 CPED1A4D0V7 1026 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 RGS9O75916 674 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 NT5EP21589 574 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 RING1Q06587 406 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 RBM39Q14498 530 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 WSCD1Q658N2 575 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF627Q7L945 461 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 GPR65Q8IYL9 337 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF808Q8N4W9 903 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 KDM1BQ8NB78 822 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 PLA2G15Q8NCC3 412 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 GON7Q9BXV9 100 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 PHF3Q92576 2039 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TBC1D3DA0A087WVF3 549 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TBC1D3IA0A087WXS9 549 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TBC1D3EA0A087X179 549 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TBC1D3KA0A087X1G2 549 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 A0A096LPI6 279 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 IQCMA0A1B0GVH7 501 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TBC1D3FA6NER0 549 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TBC1D3LB9A6J9 549 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 EEDO75530 441 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TBC1D3HP0C7X1 549 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF43P17038 809 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TGM4P49221 684 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 DUSP3P51452 185 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TAS2R46P59540 309 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TBC1D3GQ6DHY5 549 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ALG1LQ6GMV1 187 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TBC1D3CQ6IPX1 549 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 FIGNL1Q6PIW4 674 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 GSG1LQ6UXU4 331 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SPPL2CQ8IUH8 684 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TBC1D3Q8IZP1 549 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZFP3Q96NJ6 502 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF317Q96PQ6 595 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 LENG8Q96PV6 779 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SMAD5Q99717 465 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 MVB12BQ9H7P6 319 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 FAM205CA6NFA0 338 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SC5DO75845 299 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 LY86O95711 162 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 PTBP1P26599 531 aaKnown RBP eCLIP5.87□□□□□ -1.471e-7■■■■■ 29.3
VPS13D-201ENST00000011700 HBG1P69891 147 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 HBG2P69892 147 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 MARVELD2Q8N4S9 558 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SLC37A3Q8NCC5 494 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 DNAJC19Q96DA6 116 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 RRNAD1Q96FB5 475 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF578Q96N58 590 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 DOHHQ9BU89 302 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 C11orf84Q9BUA3 381 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TCEAL2Q9H3H9 227 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TREM1Q9NP99 234 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 COQ4Q9Y3A0 265 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 NPEPPSL1A6NEC2 478 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 PEX10O60683 326 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 PTHP01270 115 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 GP1BBP13224 206 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 WEE1P30291 646 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF92Q03936 586 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SMARCD3Q6STE5 483 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SPATA6LQ8N4H0 392 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 CERS5Q8N5B7 392 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 OR56A3Q8NH54 315 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 KIAA1143Q96AT1 154 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ADAM33Q9BZ11 813 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 BIN3Q9NQY0 253 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 PIGVQ9NUD9 493 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 FBXW11Q9UKB1 542 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 CNTNAP1P78357 1384 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ABCA4P78363 2273 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF878C9JN71 531 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 DNM1LO00429 736 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 CASC3O15234 703 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 DUSP11O75319 330 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 HBE1P02100 147 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 CDKN2CP42773 168 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF81P51508 661 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms