RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 PROS1P07225 676 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 S100A2P29034 98 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 RPS14P62263 151 aaKnown RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 RBM48Q5RL73 367 aaKnown RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SLITRK4Q8IW52 837 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 FANK1Q8TC84 345 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 KCNE4Q8WWG9 221 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SPOCK2Q92563 424 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 GLYATL1Q969I3 302 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 POLDIP3Q9BY77 421 aaKnown RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SMOC2Q9H3U7 446 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 EIF2B3Q9NR50 452 aaKnown RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 FAM86C1Q9NVL1 165 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 EGFL7Q9UHF1 273 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 NUP98P52948 1817 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SLIT2O94813 1529 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ANKRD66B4E2M5 251 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 CSTAP01040 98 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 IFNA2P01563 188 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 HAPLN1P10915 354 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 TAS2R43P59537 309 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 MPP1Q00013 466 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 GPR17Q13304 367 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 VWA2Q5GFL6 755 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 FRG2Q64ET8 278 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ARL10Q8N8L6 244 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 OR1J2Q8NGS2 313 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 DIRAS2Q96HU8 199 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 FRG2BQ96QU4 278 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 PHB2Q99623 299 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 HERC2P3Q9BVR0 1158 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF576Q9H609 170 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SLC40A1Q9NP59 571 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 PLAGL1Q9UM63 463 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 OR5H15A6NDH6 313 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 IGLON5A6NGN9 336 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 OR5H14A6NHG9 310 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 OR5H1A6NKK0 313 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ANKRD30BLA7E2S9 258 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 WNT11O96014 354 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 FOXN2P32314 431 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 GABRA3P34903 492 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 NFE2L1Q14494 772 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 RBM39Q14498 530 aaKnown RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 MPPED2Q15777 294 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 RGS21Q2M5E4 152 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 FAM174BQ3ZCQ3 159 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ISLR2Q6UXK2 745 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SLC2A12Q8TD20 617 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SORCS1Q8WY21 1168 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SLC7A6OSQ96CW6 309 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 MPP4Q96JB8 637 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ERMAPQ96PL5 475 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 CPXM1Q96SM3 734 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 GAL3ST1Q99999 423 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 MROQ9BYG7 248 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SLC17A9Q9BYT1 436 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 DPEP3Q9H4B8 488 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 PNPLA3Q9NST1 481 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 EIF2B4Q9UI10 523 aaKnown RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 TFR2Q9UP52 801 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 BLACEA4D250 179 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 C11orf98E9PRG8 122 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 LEFTY1O75610 366 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ASGR2P07307 311 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 MEF2AQ02078 507 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SLC35F1Q5T1Q4 408 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 MRPL21Q7Z2W9 205 aaKnown RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 TPRA1Q86W33 373 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 UEVLDQ8IX04 471 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 NLGN4YQ8NFZ3 816 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 TM9SF2Q99805 663 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 RBCK1Q9BYM8 510 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 TNFRSF10DQ9UBN6 386 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 AASSQ9UDR5 926 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 RAB26Q9ULW5 256 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 RIPK3Q9Y572 518 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 C10orf71Q711Q0 1435 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ANKRD65E5RJM6 399 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 BCAT2O15382 392 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 CDH11P55287 796 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 S100A10P60903 97 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 NKPD1Q17RQ9 610 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 CLEC12AQ5QGZ9 265 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 PLET1Q6UQ28 207 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 RALGPS2Q86X27 583 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 OR4N5Q8IXE1 308 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 C1orf127Q8N9H9 656 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SPERTQ8NA61 448 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 MINDY2Q8NBR6 621 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 CCDC28BQ9BUN5 200 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 POLR2J3Q9H1A7 115 aaKnown RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 FAIMQ9NVQ4 179 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ATPIF1Q9UII2 106 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 KANTRA0A1W2PQU2 76 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 MAFKO60675 156 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 CLDN7O95471 211 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 H6PDO95479 791 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SPARCP09486 303 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ZSCAN5DPP0CG00 497 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms