RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PDAP1Q13442 181 aaKnown RBP18.04■□□□□ 0.48
CLN3-262ENST00000637699 CRYMQ14894 314 aa18.04■□□□□ 0.48
CLN3-262ENST00000637699 XKR6Q5GH73 641 aa18.04■□□□□ 0.48
CLN3-262ENST00000637699 ZNF585AQ6P3V2 769 aa18.04■□□□□ 0.48
CLN3-262ENST00000637699 CLYBLQ8N0X4 340 aa18.04■□□□□ 0.48
CLN3-262ENST00000637699 NAT8LQ8N9F0 302 aa18.04■□□□□ 0.48
CLN3-262ENST00000637699 OR2M7Q8NG81 312 aa18.04■□□□□ 0.48
CLN3-262ENST00000637699 TMUB1Q9BVT8 246 aa18.04■□□□□ 0.48
CLN3-262ENST00000637699 AICDAQ9GZX7 198 aa18.04■□□□□ 0.48
CLN3-262ENST00000637699 PELI2Q9HAT8 420 aa18.04■□□□□ 0.48
CLN3-262ENST00000637699 HPF1Q9NWY4 346 aa18.04■□□□□ 0.48
CLN3-262ENST00000637699 A0A0G2JMM0 328 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 A0A1W2PPB8 328 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 A0A1W2PRS3 328 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 KIR3DP1A8MWS1 328 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 TGFBR3LH3BV60 316 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 ACOT7O00154 380 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 KLK8O60259 260 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 OR6B1O95007 311 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 SERPINA6P08185 405 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 PGAM1P18669 254 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 SAT1P21673 171 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 ACVR2AP27037 513 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 GPR143P51810 404 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 SLC13A2Q13183 592 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 RUNX2Q13950 521 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 TERF2Q15554 542 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 NXPE4Q6UWF7 544 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 THOC6Q86W42 341 aaKnown RBP18.03■□□□□ 0.48
CLN3-262ENST00000637699 SCUBE1Q8IWY4 988 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 CREB3L4Q8TEY5 395 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 ASB15Q8WXK1 588 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 FAR2Q96K12 515 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 PRTFDC1Q9NRG1 225 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 SLC17A6Q9P2U8 582 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 IKZF3Q9UKT9 509 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 PPIEQ9UNP9 301 aaKnown RBP18.03■□□□□ 0.48
CLN3-262ENST00000637699 SLC22A14Q9Y267 594 aa18.03■□□□□ 0.48
CLN3-262ENST00000637699 TMEM200CA6NKL6 621 aa18.02■□□□□ 0.48
CLN3-262ENST00000637699 HNRNPFP52597 415 aaKnown RBP18.02■□□□□ 0.48
CLN3-262ENST00000637699 BMPR2Q13873 1038 aa18.02■□□□□ 0.48
CLN3-262ENST00000637699 GPATCH11Q8N954 259 aa18.02■□□□□ 0.48
CLN3-262ENST00000637699 TMEM52Q8NDY8 209 aa18.02■□□□□ 0.48
CLN3-262ENST00000637699 GABPB2Q8TAK5 448 aaPredicted RBP18.02■□□□□ 0.48
CLN3-262ENST00000637699 MS4A14Q96JA4 679 aa18.02■□□□□ 0.48
CLN3-262ENST00000637699 SMC6Q96SB8 1091 aa18.02■□□□□ 0.48
CLN3-262ENST00000637699 TTYH2Q9BSA4 534 aa18.02■□□□□ 0.48
CLN3-262ENST00000637699 TTTY12Q9BZ98 90 aa18.02■□□□□ 0.48
CLN3-262ENST00000637699 ZDHHC11Q9H8X9 412 aa18.02■□□□□ 0.48
CLN3-262ENST00000637699 SLC24A3Q9HC58 644 aa18.02■□□□□ 0.48
CLN3-262ENST00000637699 CCM2LQ9NUG4 571 aaPredicted RBP18.02■□□□□ 0.48
CLN3-262ENST00000637699 DNAJB12Q9NXW2 375 aaKnown RBP18.02■□□□□ 0.48
CLN3-262ENST00000637699 LIPGQ9Y5X9 500 aa18.02■□□□□ 0.48
CLN3-262ENST00000637699 ZNF469Q96JG9 3925 aaPredicted RBP18.02■□□□□ 0.47
CLN3-262ENST00000637699 ACANP16112 2415 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 WWP2O00308 870 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 CLDN4O14493 209 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 BANF1O75531 89 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 ENO2P09104 434 aaPredicted RBP18.01■□□□□ 0.47
CLN3-262ENST00000637699 SOX3P41225 446 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 HSD17B7P56937 341 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 ZNF750Q32MQ0 723 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 CCDC137Q6PK04 289 aaKnown RBP18.01■□□□□ 0.47
CLN3-262ENST00000637699 CLNKQ7Z7G1 428 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 SLC22A16Q86VW1 577 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 GPALPP1Q8IXQ4 340 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 PPIL6Q8IXY8 311 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 TRIM58Q8NG06 486 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 MYOTQ9UBF9 498 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 PPP2R2CQ9Y2T4 447 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 CLDN16Q9Y5I7 305 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 KCNE2Q9Y6J6 123 aa18.01■□□□□ 0.47
CLN3-262ENST00000637699 ABCA4P78363 2273 aa18■□□□□ 0.47
CLN3-262ENST00000637699 MYOCOSA0A1B0GUC4 107 aa18■□□□□ 0.47
CLN3-262ENST00000637699 FIGNL2A6NMB9 653 aa18■□□□□ 0.47
CLN3-262ENST00000637699 BCKDKO14874 412 aa18■□□□□ 0.47
CLN3-262ENST00000637699 IFNA16P05015 189 aa18■□□□□ 0.47
CLN3-262ENST00000637699 GLI4P10075 376 aa18■□□□□ 0.47
CLN3-262ENST00000637699 MAGEA5P43359 124 aa18■□□□□ 0.47
CLN3-262ENST00000637699 ZFP36L2P47974 494 aaKnown RBP18■□□□□ 0.47
CLN3-262ENST00000637699 DLX5P56178 289 aa18■□□□□ 0.47
CLN3-262ENST00000637699 STXBP1P61764 594 aaKnown RBP18■□□□□ 0.47
CLN3-262ENST00000637699 FOLH1Q04609 750 aa18■□□□□ 0.47
CLN3-262ENST00000637699 SBSNQ6UWP8 590 aa18■□□□□ 0.47
CLN3-262ENST00000637699 B3GNT6Q6ZMB0 384 aa18■□□□□ 0.47
CLN3-262ENST00000637699 RGS9BPQ6ZS82 235 aa18■□□□□ 0.47
CLN3-262ENST00000637699 TGIF2LYQ8IUE0 185 aa18■□□□□ 0.47
CLN3-262ENST00000637699 LIX1LQ8IVB5 337 aa18■□□□□ 0.47
CLN3-262ENST00000637699 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18■□□□□ 0.47
CLN3-262ENST00000637699 FAM47BQ8NA70 645 aa18■□□□□ 0.47
CLN3-262ENST00000637699 CCT6BQ92526 530 aa18■□□□□ 0.47
CLN3-262ENST00000637699 GAL3ST3Q96A11 431 aa18■□□□□ 0.47
CLN3-262ENST00000637699 RASL10BQ96S79 203 aa18■□□□□ 0.47
CLN3-262ENST00000637699 FOXC2Q99958 501 aa18■□□□□ 0.47
CLN3-262ENST00000637699 LIME1Q9H400 295 aa18■□□□□ 0.47
CLN3-262ENST00000637699 ADAP2Q9NPF8 381 aa18■□□□□ 0.47
CLN3-262ENST00000637699 PPANQ9NQ55 473 aaKnown RBP18■□□□□ 0.47
CLN3-262ENST00000637699 VWA7Q9Y334 891 aa18■□□□□ 0.47
CLN3-262ENST00000637699 L3MBTL1Q9Y468 752 aa18■□□□□ 0.47
CLN3-262ENST00000637699 FAM215AQ9Y5M1 114 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms