RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CD300AQ9UGN4 299 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 PACSIN3Q9UKS6 424 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 RAB23Q9ULC3 237 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 ASB4Q9Y574 426 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 CABIN1Q9Y6J0 2220 aa17.5■□□□□ 0.39
CLN3-254ENST00000637050 TRBV5-3A0A0A0MS03 114 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 C15orf38-AP3S2A0A0A6YYH1 394 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 PRSS51A0A1B0GVH4 220 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 SRPX2O60687 465 aaPredicted RBP17.49■□□□□ 0.39
CLN3-254ENST00000637050 CIB2O75838 187 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 ZBTB11O95625 1053 aaPredicted RBP17.49■□□□□ 0.39
CLN3-254ENST00000637050 EIF2S1P05198 315 aaKnown RBP17.49■□□□□ 0.39
CLN3-254ENST00000637050 HOXB9P17482 250 aaPredicted RBP17.49■□□□□ 0.39
CLN3-254ENST00000637050 CERS1P27544 350 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 PTPN6P29350 595 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 BTN3A2P78410 334 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 SLAMF1Q13291 335 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 SQSTM1Q13501 440 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 SUZ12Q15022 739 aaKnown RBP17.49■□□□□ 0.39
CLN3-254ENST00000637050 SAMD4BQ5PRF9 694 aaKnown RBP17.49■□□□□ 0.39
CLN3-254ENST00000637050 ANXA8L1Q5VT79 327 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 TMEM214Q6NUQ4 689 aaKnown RBP17.49■□□□□ 0.39
CLN3-254ENST00000637050 CYB5D1Q6P9G0 228 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 ABHD13Q7L211 337 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 ARPINQ7Z6K5 226 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 ANKRD46Q86W74 232 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 MMP21Q8N119 569 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 WDR60Q8WVS4 1066 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 CCDC3Q9BQI4 270 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 INPP5KQ9BT40 448 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 CMTM6Q9NX76 183 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 TEX10Q9NXF1 929 aaPredicted RBP17.49■□□□□ 0.39
CLN3-254ENST00000637050 VAPAQ9P0L0 249 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 BTNL2Q9UIR0 455 aa17.49■□□□□ 0.39
CLN3-254ENST00000637050 CPED1A4D0V7 1026 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 RNASET2O00584 256 aaKnown RBP17.48■□□□□ 0.39
CLN3-254ENST00000637050 NME4O00746 187 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 MGRN1O60291 552 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 ZNF883P0CG24 379 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 DRD2P14416 443 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 ME2P23368 584 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 TRPC1P48995 793 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 LRRC74AQ0VAA2 488 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 PRSS53Q2L4Q9 553 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 DEFB110Q30KQ9 67 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 WASHC2DQ5SRD0 308 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 PERM1Q5SV97 790 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 TCEAL6Q6IPX3 200 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 USP53Q70EK8 1073 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 TICAM1Q8IUC6 712 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 MSRB3Q8IXL7 192 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 RNF148Q8N7C7 305 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 VPS37AQ8NEZ2 397 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 NAT6Q93015 286 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 TCEAL3Q969E4 200 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 MIEF2Q96C03 454 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 ZNF285Q96NJ3 590 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 CCDC115Q96NT0 180 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 NLNQ9BYT8 704 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 COPS7BQ9H9Q2 264 aaPredicted RBP17.48■□□□□ 0.39
CLN3-254ENST00000637050 PDE7BQ9NP56 450 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 MIEF1Q9NQG6 463 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 SLC25A37Q9NYZ2 338 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 POMPQ9Y244 141 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 PRORSD1PA6NEY8 169 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 TXNDC9O14530 226 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 RFXANKO14593 260 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 GUCY1B2O75343 617 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 ALOX12P18054 663 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 MLLT3P42568 568 aaPredicted RBP17.48■□□□□ 0.39
CLN3-254ENST00000637050 KPNB1Q14974 876 aaKnown RBP17.48■□□□□ 0.39
CLN3-254ENST00000637050 MPEG1Q2M385 716 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 PRTGQ2VWP7 1150 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 PROX2Q3B8N5 592 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 SPATS1Q496A3 300 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 RABL3Q5HYI8 236 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 LAIR1Q6GTX8 287 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 PRSS42Q7Z5A4 293 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 ARHGEF39Q8N4T4 335 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 OR8J3Q8NGG0 315 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 ZCCHC10Q8TBK6 192 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 CCDC124Q96CT7 223 aaKnown RBP17.48■□□□□ 0.39
CLN3-254ENST00000637050 ANKRD27Q96NW4 1050 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 SERINC2Q96SA4 455 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 TRIM8Q9BZR9 551 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 SLC6A13Q9NSD5 602 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 SOHLH2Q9NX45 425 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 LYARQ9NX58 379 aaKnown RBP17.48■□□□□ 0.39
CLN3-254ENST00000637050 TMEM9Q9P0T7 183 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 KLHL3Q9UH77 587 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 PLCL2Q9UPR0 1127 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 MRPS2Q9Y399 296 aaKnown RBP17.48■□□□□ 0.39
CLN3-254ENST00000637050 PCDHB14Q9Y5E9 798 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 SLC22A7Q9Y694 548 aa17.48■□□□□ 0.39
CLN3-254ENST00000637050 MAP3K7O43318 606 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 CKMT1AP12532 417 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 CDKN2CP42773 168 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 RIPK1Q13546 671 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 MUM1Q2TAK8 710 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 DEFB134Q4QY38 66 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms