RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 SLC6A19Q695T7 634 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 NIPAL1Q6NVV3 410 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 MRPL14Q6P1L8 145 aaKnown RBP16.83■□□□□ 0.28
CLN3-247ENST00000636351 LETMD1Q6P1Q0 360 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 TRIM40Q6P9F5 258 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 GPRIN3Q6ZVF9 776 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 EXOC3L1Q86VI1 746 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 PDSS2Q86YH6 399 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 RAB43Q86YS6 212 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 RP1L1Q8IWN7 2480 aaPredicted RBP16.83■□□□□ 0.28
CLN3-247ENST00000636351 AFAP1L2Q8N4X5 818 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 TMEM102Q8N9M5 508 aaPredicted RBP16.83■□□□□ 0.28
CLN3-247ENST00000636351 OR2Y1Q8NGV0 311 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 STT3BQ8TCJ2 826 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 ZNF473Q8WTR7 871 aaKnown RBP16.83■□□□□ 0.28
CLN3-247ENST00000636351 SREK1Q8WXA9 508 aaKnown RBP16.83■□□□□ 0.28
CLN3-247ENST00000636351 CENPKQ9BS16 269 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 WDR54Q9H977 334 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 KCNK9Q9NPC2 374 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 MKKSQ9NPJ1 570 aaPredicted RBP16.83■□□□□ 0.28
CLN3-247ENST00000636351 DMRT3Q9NQL9 472 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 C14orf105Q9NVL8 296 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 GPR83Q9NYM4 423 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 ICE1Q9Y2F5 2266 aa16.83■□□□□ 0.28
CLN3-247ENST00000636351 LRIT2A6NDA9 550 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 H0YIV9 168 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 PPP6CO00743 305 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 TYROBPO43914 113 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 GALR3O60755 368 aaPredicted RBP16.82■□□□□ 0.28
CLN3-247ENST00000636351 ONECUT2O95948 504 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 TGFB1P01137 390 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 RAP1GDS1P52306 607 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 OLR1P78380 273 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 BTN3A2P78410 334 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 GGTA1PQ4G0N0 100 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 SGO1Q5FBB7 561 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 MED25Q71SY5 747 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 HDXQ7Z353 690 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 HPS6Q86YV9 775 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 RNF175Q8N4F7 328 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 RBMXL3Q8N7X1 1067 aaKnown RBP16.82■□□□□ 0.28
CLN3-247ENST00000636351 OR2L5Q8NG80 312 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 PNPLA2Q96AD5 504 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 MTFMTQ96DP5 389 aaKnown RBP16.82■□□□□ 0.28
CLN3-247ENST00000636351 MS4A6EQ96DS6 147 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 CMTM7Q96FZ5 175 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 F2RL3Q96RI0 385 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 ZNF382Q96SR6 550 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 CRB3Q9BUF7 120 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 MECRQ9BV79 373 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 MS4A8Q9BY19 250 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 RBCK1Q9BYM8 510 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 SLC29A3Q9BZD2 475 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 AICDAQ9GZX7 198 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 SLC26A1Q9H2B4 701 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 GSTO2Q9H4Y5 243 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 ELOVL6Q9H5J4 265 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 OXSMQ9NWU1 459 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 TRPS1Q9UHF7 1281 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 ACTL7BQ9Y614 415 aa16.82■□□□□ 0.28
CLN3-247ENST00000636351 C4orf51C9J302 202 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 SAP18O00422 153 aaKnown RBP16.81■□□□□ 0.28
CLN3-247ENST00000636351 CRCPO75575 148 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 KLF7O75840 302 aaPredicted RBP16.81■□□□□ 0.28
CLN3-247ENST00000636351 OR4F21O95013 312 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 ZGLP1P0C6A0 271 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 HMOX2P30519 316 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 ALDH3A1P30838 453 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 PIK3CBP42338 1070 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 XCR1P46094 333 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 RRADP55042 308 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 PKNOX1P55347 436 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 NAA20P61599 178 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 RPS13P62277 151 aaKnown RBP16.81■□□□□ 0.28
CLN3-247ENST00000636351 VWA2Q5GFL6 755 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 FRG2Q64ET8 278 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 FRMD7Q6ZUT3 714 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 CHSY3Q70JA7 882 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 ZC3H7AQ8IWR0 971 aaKnown RBP16.81■□□□□ 0.28
CLN3-247ENST00000636351 CDYL2Q8N8U2 506 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 OR5T3Q8NGG3 340 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 OR51Q1Q8NH59 317 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 KCNC2Q96PR1 638 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 FRG2BQ96QU4 278 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 SPSB2Q99619 263 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 SMAD5Q99717 465 aaKnown RBP16.81■□□□□ 0.28
CLN3-247ENST00000636351 OR51B5Q9H339 312 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 SSU72Q9NP77 194 aaKnown RBP16.81■□□□□ 0.28
CLN3-247ENST00000636351 MID1IP1Q9NPA3 183 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 SNX6Q9UNH7 406 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 PCSK5Q92824 1860 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 SHANK1Q9Y566 2161 aa16.81■□□□□ 0.28
CLN3-247ENST00000636351 MED13Q9UHV7 2174 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 A0A1B0GTL3 188 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 MAGEB17A8MXT2 336 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 PSMD12O00232 456 aaPredicted RBP16.8■□□□□ 0.28
CLN3-247ENST00000636351 TRIM13O60858 407 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 SSR2P43308 183 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 NEK2P51955 445 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 KLC1Q07866 573 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms