RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SMUG1Q53HV7 270 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 BCL2L15Q5TBC7 163 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 LYPLAL1Q5VWZ2 237 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 ANKRD54Q6NXT1 300 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 ADGRD2Q7Z7M1 963 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 CACUL1Q86Y37 369 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 FAM109AQ8N4B1 249 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 AKAP1Q92667 903 aaKnown RBP eCLIP10.6□□□□□ -0.71
CLN3-244ENST00000636147 COL26A1Q96A83 441 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 ZNF607Q96SK3 696 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 NELL2Q99435 816 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 ABCG5Q9H222 651 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 DIABLOQ9NR28 239 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 TLR9Q9NR96 1032 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 SIRT5Q9NXA8 310 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 HCN2Q9UL51 889 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 MAU2Q9Y6X3 613 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 CLTBP09497 229 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 JUNDP17535 347 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 SLC14A1Q13336 389 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 POU4F3Q15319 338 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 BAK1Q16611 211 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 FLYWCH1Q4VC44 716 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 MED27Q6P2C8 311 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 OR6F1Q8NGZ6 308 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 REPS1Q96D71 796 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 LRR1Q96L50 414 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 UROC1Q96N76 676 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 AHSPQ9NZD4 102 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 EXTL2Q9UBQ6 330 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 STUB1Q9UNE7 303 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 ARHGEF33A8MVX0 844 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 M0R082 166 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 KDELR3O43731 214 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 ENDOUP21128 410 aaKnown RBP10.6□□□□□ -0.71
CLN3-244ENST00000636147 UGT2B10P36537 528 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 BMPR1AP36894 532 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 PREPP48147 710 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 SMIM11AP58511 58 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 TAS2R41P59536 307 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 DSTNP60981 165 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 IFITM2Q01629 132 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 ZMYND11Q15326 602 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 GPR19Q15760 415 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 FAM171BQ6P995 826 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 CNIH2Q6PI25 160 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 ZNF730Q6ZMV8 503 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 GALNT7Q86SF2 657 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 THOC6Q86W42 341 aaKnown RBP10.6□□□□□ -0.71
CLN3-244ENST00000636147 GALNT13Q8IUC8 556 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 NXPE1Q8N323 547 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 SIMC1Q8NDZ2 872 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 PIP5K1AQ99755 562 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 IL17CQ9P0M4 197 aa10.6□□□□□ -0.71
CLN3-244ENST00000636147 PPIEQ9UNP9 301 aaKnown RBP10.6□□□□□ -0.71
CLN3-244ENST00000636147 LOC105369274A0A096LPK9 316 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 CD8B2A6NJW9 211 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 H7C4K7 107 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 OR7A10O76100 309 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 CD8BP10966 210 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 SNRPD1P62314 119 aaKnown RBP10.59□□□□□ -0.71
CLN3-244ENST00000636147 SELENOWP63302 87 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 RGNQ15493 299 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 BCL2A1Q16548 175 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 MICAQ29983 383 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 FRMPD2BQ6IN97 320 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 TSPAN33Q86UF1 283 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 MSRB3Q8IXL7 192 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 CHPFQ8IZ52 775 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 OR4N4Q8N0Y3 316 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 C10orf111Q8N326 155 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 LINC01465Q8N7H1 131 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 GALNT6Q8NCL4 622 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 NEIL3Q8TAT5 605 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 NMNAT1Q9HAN9 279 aaPredicted RBP10.59□□□□□ -0.71
CLN3-244ENST00000636147 ENAMQ9NRM1 1142 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 TAS2R7Q9NYW3 318 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 KIAA1522Q9P206 1035 aaPredicted RBP10.59□□□□□ -0.71
CLN3-244ENST00000636147 MGAT4AQ9UM21 535 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 KPNA3O00505 521 aaPredicted RBP10.59□□□□□ -0.71
CLN3-244ENST00000636147 LYRM1O43325 122 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 GPX5O75715 221 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 C8GP07360 202 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 PRG2P13727 222 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 C4BPBP20851 252 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 LGALS3BPQ08380 585 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 MAP2K5Q13163 448 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 DOC2AQ14183 400 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 LRRC70Q7Z2Q7 622 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 SERPINA11Q86U17 422 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 PIAS4Q8N2W9 510 aaPredicted RBP10.59□□□□□ -0.71
CLN3-244ENST00000636147 TRPV1Q8NER1 839 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 SLC16A10Q8TF71 515 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 MRPS31Q92665 395 aaKnown RBP10.59□□□□□ -0.71
CLN3-244ENST00000636147 SCAMP4Q969E2 229 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 TTYH1Q9H313 450 aaPredicted RBP10.59□□□□□ -0.71
CLN3-244ENST00000636147 IL26Q9NPH9 171 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 KLHL28Q9NXS3 571 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 MAN2B2Q9Y2E5 1009 aa10.59□□□□□ -0.71
CLN3-244ENST00000636147 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms