RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CSN2P05814 226 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 STSP08842 583 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 GCAP28676 217 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 CCKBRP32239 447 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 MAGEA6P43360 314 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 HNRNPA0Q13151 305 aaKnown RBP13.49□□□□□ -0.25
CPSF1-212ENST00000616140 LIPKQ5VXJ0 399 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 NRG4Q8WWG1 115 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 GSTO2Q9H4Y5 243 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 RC3H2Q9HBD1 1191 aaKnown RBP13.49□□□□□ -0.25
CPSF1-212ENST00000616140 Q9N2J8 555 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 ACSL6Q9UKU0 697 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 MYADML2A6NDP7 307 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF860A6NHJ4 632 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 RTCAO00442 366 aaKnown RBP13.48□□□□□ -0.25
CPSF1-212ENST00000616140 RBMXL2O75526 392 aaKnown RBP13.48□□□□□ -0.25
CPSF1-212ENST00000616140 PEPDP12955 493 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 GM2AP17900 193 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 CXCR1P25024 350 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 MLLT10P55197 1068 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 MAZP56270 477 aaKnown RBP13.48□□□□□ -0.25
CPSF1-212ENST00000616140 EXOC3L2Q2M3D2 409 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 C4orf46Q504U0 113 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 QSOX2Q6ZRP7 698 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 SCD5Q86SK9 330 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 SCML4Q8N228 414 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 SORCS1Q8WY21 1168 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 SMPDL3BQ92485 455 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 FUNDC2Q9BWH2 189 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 IFT46Q9NQC8 304 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 PNO1Q9NRX1 252 aaKnown RBP13.48□□□□□ -0.25
CPSF1-212ENST00000616140 LYARQ9NX58 379 aaKnown RBP13.48□□□□□ -0.25
CPSF1-212ENST00000616140 HSPB11Q9Y547 144 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 ACTL7AQ9Y615 435 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 CHD2O14647 1828 aaKnown RBP13.48□□□□□ -0.25
CPSF1-212ENST00000616140 H3BSH0 61 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 WRBO00258 174 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 VILLO15195 856 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 TLX3O43711 291 aaPredicted RBP13.48□□□□□ -0.25
CPSF1-212ENST00000616140 PCDHGA12O60330 932 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF432O94892 652 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 SLITRK5O94991 958 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 OR12D1P0DN82 309 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 FOXA1P55317 472 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 RPS26P62854 115 aaKnown RBP13.48□□□□□ -0.25
CPSF1-212ENST00000616140 ADAM15Q13444 863 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 DSG2Q14126 1118 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 PAGE3Q5JUK9 113 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 TSPAN33Q86UF1 283 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 CLECL1Q8IZS7 167 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 OR2L5Q8NG80 312 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 CEP76Q8TAP6 659 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 FUZQ9BT04 418 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 B3GNT4Q9C0J1 378 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 F5P12259 2224 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 A0A0U1RQS6 177 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 OR14I1A6ND48 311 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 CAPN14A8MX76 684 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 SLC1A7O00341 560 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 DNAJB5O75953 348 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 S100A6P06703 90 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 FCER2P06734 321 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 BPIP17213 487 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 TBPL1P62380 186 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF776Q68DI1 518 aaPredicted RBP13.48□□□□□ -0.25
CPSF1-212ENST00000616140 SLC27A4Q6P1M0 643 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 ARMC10Q8N2F6 343 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 LNX2Q8N448 690 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 CHCHD4Q8N4Q1 142 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 TTTY10Q9BZA0 68 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 OR51I1Q9H343 314 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 SPHK2Q9NRA0 654 aa13.48□□□□□ -0.25
CPSF1-212ENST00000616140 CNOT11Q9UKZ1 510 aaKnown RBP13.48□□□□□ -0.25
CPSF1-212ENST00000616140 CD9P21926 228 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 UQCRC2P22695 453 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 CD47Q08722 323 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 KANK2Q63ZY3 851 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 LETMD1Q6P1Q0 360 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 NRSN1Q8IZ57 195 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 TMIGD2Q96BF3 282 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 ADAD1Q96M93 576 aaKnown RBP13.47□□□□□ -0.25
CPSF1-212ENST00000616140 RGS17Q9UGC6 210 aaPredicted RBP13.47□□□□□ -0.25
CPSF1-212ENST00000616140 EMCNQ9ULC0 261 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 ASGR2P07307 311 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 ETFAP13804 333 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 HSD3B1P14060 373 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 HSD3B2P26439 372 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 GALNT12Q8IXK2 581 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 APCDD1Q8J025 514 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 DTWD1Q8N5C7 304 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 SLC37A3Q8NCC5 494 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 LRRC20Q8TCA0 184 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 OR5P2Q8WZ92 322 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 JSRP1Q96MG2 331 aaPredicted RBP13.47□□□□□ -0.25
CPSF1-212ENST00000616140 DGAT2Q96PD7 388 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 BEX2Q9BXY8 128 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 RETREG1Q9H6L5 497 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 BEX1Q9HBH7 125 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 BLOC1S5-TXNDC5H3BN57 136 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 PPP6CO00743 305 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms