RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 KIF2BQ8N4N8 673 aa17.55■□□□□ 0.4
PNKP-213ENST00000599543 DCAKDQ8WVC6 231 aa17.55■□□□□ 0.4
PNKP-213ENST00000599543 ITLN2Q8WWU7 325 aaPredicted RBP17.55■□□□□ 0.4
PNKP-213ENST00000599543 EXT2Q93063 718 aa17.55■□□□□ 0.4
PNKP-213ENST00000599543 MAGED4Q96JG8 741 aa17.55■□□□□ 0.4
PNKP-213ENST00000599543 KLHL31Q9H511 634 aa17.55■□□□□ 0.4
PNKP-213ENST00000599543 POPDC3Q9HBV1 291 aa17.55■□□□□ 0.4
PNKP-213ENST00000599543 PRDM9Q9NQV7 894 aa17.55■□□□□ 0.4
PNKP-213ENST00000599543 SNX15Q9NRS6 342 aa17.55■□□□□ 0.4
PNKP-213ENST00000599543 LRFN1Q9P244 771 aa17.55■□□□□ 0.4
PNKP-213ENST00000599543 PKDREJQ9NTG1 2253 aa17.55■□□□□ 0.4
PNKP-213ENST00000599543 ASPDHA6ND91 283 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 NCF1BA6NI72 391 aaPredicted RBP17.54■□□□□ 0.4
PNKP-213ENST00000599543 NCF1CA8MVU1 366 aaPredicted RBP17.54■□□□□ 0.4
PNKP-213ENST00000599543 NEURL1O76050 574 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 SHBGP04278 402 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 NCF1P14598 390 aaPredicted RBP17.54■□□□□ 0.4
PNKP-213ENST00000599543 GCAP28676 217 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 STXBP1P61764 594 aaKnown RBP17.54■□□□□ 0.4
PNKP-213ENST00000599543 ILF2Q12905 390 aaKnown RBP17.54■□□□□ 0.4
PNKP-213ENST00000599543 ART3Q13508 389 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 OR4D1Q15615 310 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 KRTCAP3Q53RY4 240 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 FBXO48Q5FWF7 155 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 SP5Q6BEB4 398 aaPredicted RBP17.54■□□□□ 0.4
PNKP-213ENST00000599543 RPTNQ6XPR3 784 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 GALNTL5Q7Z4T8 443 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 MRGPRGQ86SM5 289 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.54■□□□□ 0.4
PNKP-213ENST00000599543 TTLQ8NG68 377 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 CREB3L4Q8TEY5 395 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 THAP3Q8WTV1 239 aaPredicted RBP17.54■□□□□ 0.4
PNKP-213ENST00000599543 KCTD4Q8WVF5 259 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 FAR2Q96K12 515 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 GPR137Q96N19 417 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 FRMD6Q96NE9 622 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 TSPAN10Q9H1Z9 355 aaPredicted RBP17.54■□□□□ 0.4
PNKP-213ENST00000599543 KLF2Q9Y5W3 355 aaPredicted RBP17.54■□□□□ 0.4
PNKP-213ENST00000599543 IKBKGQ9Y6K9 419 aa17.54■□□□□ 0.4
PNKP-213ENST00000599543 CACNA1CQ13936 2221 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 NCOA6Q14686 2063 aaPredicted RBP17.53■□□□□ 0.4
PNKP-213ENST00000599543 IGKV3D-11A0A0A0MRZ8 115 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 TCRBV16S1A1N1A0A5B0 115 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 C4orf51C9J302 202 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 CDK2AP1O14519 115 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 H2AFYO75367 372 aaKnown RBP17.53■□□□□ 0.4
PNKP-213ENST00000599543 SLC25A12O75746 678 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 ALDOAP04075 364 aaKnown RBP17.53■□□□□ 0.4
PNKP-213ENST00000599543 SP1P08047 785 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 ABHD2P08910 425 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 SMIM10L1P0DMW3 83 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 CD1DP15813 335 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 TPP2P29144 1249 aaPredicted RBP17.53■□□□□ 0.4
PNKP-213ENST00000599543 GDF5P43026 501 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 CYB561P49447 251 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 MAPKAPK3Q16644 382 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 SLC25A25Q6KCM7 469 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 CA13Q8N1Q1 262 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 ZNF808Q8N4W9 903 aaPredicted RBP17.53■□□□□ 0.4
PNKP-213ENST00000599543 CCT6BQ92526 530 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 GAL3ST3Q96A11 431 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 RHBDF1Q96CC6 855 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 NXNL1Q96CM4 212 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 SMIM10Q96HG1 83 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 DERL2Q9GZP9 239 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 VPS11Q9H270 941 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 RUBCNLQ9H714 662 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 IGSF5Q9NSI5 407 aa17.53■□□□□ 0.4
PNKP-213ENST00000599543 SMIM23A6NLE4 172 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 TRIM49D1C9J1S8 452 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 NPIPA5E9PKD4 350 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 FCHO1O14526 889 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 C2P06681 752 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 C1GALT1C1LP0DN25 315 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 ESRRAP11474 423 aaPredicted RBP17.52■□□□□ 0.4
PNKP-213ENST00000599543 GSTM2P28161 218 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 SLC6A12P48065 614 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 BTN3A2P78410 334 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 SLBPQ14493 270 aaKnown RBP eCLIP17.52■□□□□ 0.4
PNKP-213ENST00000599543 TMIGD1Q6UXZ0 262 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 SLCO4C1Q6ZQN7 724 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.52■□□□□ 0.4
PNKP-213ENST00000599543 KRT78Q8N1N4 520 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 EIF1ADQ8N9N8 165 aaKnown RBP17.52■□□□□ 0.4
PNKP-213ENST00000599543 TMEM125Q96AQ2 219 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 DEFB126Q9BYW3 111 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 ALG9Q9H6U8 611 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 NECTIN3Q9NQS3 549 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 ZNF358Q9NW07 568 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 TINAGQ9UJW2 476 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 NPIPA1Q9UND3 350 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 MMACHCQ9Y4U1 282 aa17.52■□□□□ 0.4
PNKP-213ENST00000599543 A0A088AWK7 358 aa17.51■□□□□ 0.39
PNKP-213ENST00000599543 A0A096LPK6 155 aa17.51■□□□□ 0.39
PNKP-213ENST00000599543 A8MUA0 341 aa17.51■□□□□ 0.39
PNKP-213ENST00000599543 FOXO6A8MYZ6 492 aa17.51■□□□□ 0.39
PNKP-213ENST00000599543 ERI3O43414 337 aaKnown RBP17.51■□□□□ 0.39
PNKP-213ENST00000599543 NME2P1O60361 137 aa17.51■□□□□ 0.39
PNKP-213ENST00000599543 WISP2O76076 250 aa17.51■□□□□ 0.39
PNKP-213ENST00000599543 ZNF24P17028 368 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms