RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ALDH3A1P30838 453 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 HNMTP50135 292 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 PRKAA2P54646 552 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 ALDH18A1P54886 795 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 DNAJB13P59910 316 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 PRKG2Q13237 762 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 ARHGAP19Q14CB8 494 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 SETDB1Q15047 1291 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 TLDC1Q6P9B6 456 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 MBOAT1Q6ZNC8 495 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 TCAIMQ8N3R3 496 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 ARFGAP2Q8N6H7 521 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 ANKRD42Q8N9B4 389 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 WFDC11Q8NEX6 87 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 OR52E1Q8NGJ3 308 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 OR6Y1Q8NGX8 325 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 HMGCLL1Q8TB92 370 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 PHF10Q8WUB8 498 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 UBTD2Q8WUN7 234 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 ZNF480Q8WV37 535 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 CCDC126Q96EE4 140 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 C18orf12Q96KH6 178 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 TMEM79Q9BSE2 394 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 C1QTNF3Q9BXJ4 246 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 ARL15Q9NXU5 204 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 CD274Q9NZQ7 290 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 STOX2Q9P2F5 926 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 NPIPA1Q9UND3 350 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 NSG1A0A0A6YYJ2 146 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 OR5H15A6NDH6 313 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 SMIM24O75264 130 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 GUCA1CO95843 209 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 SLC16A8O95907 504 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 UGT2B7P16662 529 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 PKLRP30613 574 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 HSD17B2P37059 387 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 SLC6A12P48065 614 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 DGKQP52824 942 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 ALDH6A1Q02252 535 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 EEF1A2Q05639 463 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 PCBP2Q15366 365 aaKnown RBP eCLIP13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 PFKFB4Q16877 469 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 METTL2BQ6P1Q9 378 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 AMIGO1Q86WK6 493 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 SLC22A9Q8IVM8 553 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 C10orf107Q8IVU9 208 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 DMRTC2Q8IXT2 367 aaPredicted RBP13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 ADGRF3Q8IZF5 1079 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 CCDC63Q8NA47 563 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 OR56A3Q8NH54 315 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 ATL1Q8WXF7 558 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 EXT2Q93063 718 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 ARSGQ96EG1 525 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 L3HYPDHQ96EM0 354 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 DMRTA2Q96SC8 542 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 MECRQ9BV79 373 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 UCK2Q9BZX2 261 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 KCNN3Q9UGI6 736 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 NXT1Q9UKK6 140 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 ICKQ9UPZ9 632 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 TDRKHQ9Y2W6 561 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 HCFC1P51610 2035 aa13.11□□□□□ -0.31
SHKBP1-218ENST00000598907 INTS1Q8N201 2190 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 NCF1BA6NI72 391 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 NCF1CA8MVU1 366 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 E7ENX8 843 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 E9PLN8 166 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 KDM1AO60341 852 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 WFS1O76024 890 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 S100BP04271 92 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 INHBBP09529 407 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 GFAPP14136 432 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 NCF1P14598 390 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 IMPDH1P20839 514 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 OR1D4P47884 311 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 RAB28P51157 221 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 PNLIPRP1P54315 467 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 TAP2Q03519 686 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 ZNF33BQ06732 778 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 PCOLCEQ15113 449 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 SLC5A12Q1EHB4 618 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 C18orf21Q32NC0 220 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 ZNF766Q5HY98 468 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 ZNF678Q5SXM1 525 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 HHATQ5VTY9 493 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 LIPMQ5VYY2 423 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 AGTRAPQ6RW13 159 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 DOLPP1Q86YN1 238 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 DTWD1Q8N5C7 304 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 AMER2Q8N7J2 671 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 PTGR2Q8N8N7 351 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 LINC01555Q8NAE3 123 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 OR2L8Q8NGY9 312 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 FAM76AQ8TAV0 307 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 MGARPQ8TDB4 240 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 THAP3Q8WTV1 239 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 PHF21BQ96EK2 531 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 RMND5BQ96G75 393 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 IL17FQ96PD4 163 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 ALPK1Q96QP1 1244 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms