RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ABCB9Q9NP78 766 aa14.64□□□□□ -0.07
UPF1-204ENST00000596842 TRBV5-4A0A0C4DH59 114 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 A0A0G2JN53 185 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 C5orf58C9J3I9 102 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 SCO1O75880 301 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 URODP06132 367 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 FHP07954 510 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 C1SP09871 688 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 HNMTP50135 292 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.63□□□□□ -0.07
UPF1-204ENST00000596842 GCNT6Q5T4J0 391 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.63□□□□□ -0.07
UPF1-204ENST00000596842 OLIG3Q7RTU3 272 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 GRAMD2AQ8IUY3 354 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 ASCC1Q8N9N2 400 aaKnown RBP14.63□□□□□ -0.07
UPF1-204ENST00000596842 MRPS31Q92665 395 aaKnown RBP14.63□□□□□ -0.07
UPF1-204ENST00000596842 PPCDCQ96CD2 204 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 ALG14Q96F25 216 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 PSD2Q9BQI7 771 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 ASIC5Q9NY37 505 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 ZNF226Q9NYT6 803 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 CLEC2DQ9UHP7 191 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 TMPRSS11EQ9UL52 423 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 CDH23Q9H251 3354 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 PRAMEF33A0A0G2JMD5 474 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 A0A1W2PQ45 241 aaPredicted RBP14.63□□□□□ -0.07
UPF1-204ENST00000596842 A0A1W2PQY0 241 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 TRBC2A0A5B9 178 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 C12orf71A8MTZ7 269 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 PRAMEF10O60809 474 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 SLC15A1P46059 708 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 SPINT3P49223 89 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 CDK6Q00534 326 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 CLPPQ16740 277 aaPredicted RBP14.63□□□□□ -0.07
UPF1-204ENST00000596842 FAHD1Q6P587 224 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 TRMT11Q7Z4G4 463 aaKnown RBP14.63□□□□□ -0.07
UPF1-204ENST00000596842 CACUL1Q86Y37 369 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 GALNT12Q8IXK2 581 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 ZNF740Q8NDX6 193 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 FBLIM1Q8WUP2 373 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 GABARAPL1Q9H0R8 117 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 MALT1Q9UDY8 824 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 PRKAB1Q9Y478 270 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 RTCAO00442 366 aaKnown RBP14.63□□□□□ -0.07
UPF1-204ENST00000596842 STATHP02808 62 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 SLC5A12Q1EHB4 618 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 SLC8B1Q6J4K2 584 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 HSD11B1LQ7Z5J1 315 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 NRARPQ7Z6K4 114 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 TRAPPC5Q8IUR0 188 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 SYNPOQ8N3V7 929 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 CAMKK1Q8N5S9 505 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 L3MBTL4Q8NA19 623 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 WDR48Q8TAF3 677 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 RAET1EQ8TD07 263 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 TRIM63Q969Q1 353 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 SMAD5Q99717 465 aaKnown RBP14.63□□□□□ -0.07
UPF1-204ENST00000596842 PLAGL1Q9UM63 463 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 ERVW-1Q9UQF0 538 aa14.63□□□□□ -0.07
UPF1-204ENST00000596842 SAGE2PA6NJ88 616 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 CBSLP0DN79 551 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 SSTR4P31391 388 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 CBSP35520 551 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 CASP3P42574 277 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 SLC6A12P48065 614 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 SLBPQ14493 270 aaKnown RBP eCLIP14.62□□□□□ -0.07
UPF1-204ENST00000596842 FAM26DQ5JW98 314 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 BPHLQ86WA6 291 aaPredicted RBP14.62□□□□□ -0.07
UPF1-204ENST00000596842 FCGR1BQ92637 280 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 CPNE5Q9HCH3 593 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 MRPL17Q9NRX2 175 aaKnown RBP14.62□□□□□ -0.07
UPF1-204ENST00000596842 WBP11Q9Y2W2 641 aaKnown RBP14.62□□□□□ -0.07
UPF1-204ENST00000596842 KCNE2Q9Y6J6 123 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 SNX4O95219 450 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 CATP04040 527 aaKnown RBP14.62□□□□□ -0.07
UPF1-204ENST00000596842 PTNP21246 168 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 HLA-FP30511 346 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 CCT3P49368 545 aaKnown RBP14.62□□□□□ -0.07
UPF1-204ENST00000596842 TBCEQ15813 527 aaPredicted RBP14.62□□□□□ -0.07
UPF1-204ENST00000596842 SPDYE7PQ495Y7 208 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 C22orf39Q6P5X5 142 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 TUBA3EQ6PEY2 450 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 CFAP206Q8IYR0 622 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 IQCF1Q8N6M8 205 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 OR4K3Q96R72 315 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 CLN6Q9NWW5 311 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 EIF2S1P05198 315 aaKnown RBP14.62□□□□□ -0.07
UPF1-204ENST00000596842 IDSP22304 550 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 UGT2B15P54855 530 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 CDKN3Q16667 212 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 ZNF181Q2M3W8 571 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 NXNL2Q5VZ03 156 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 TMEM220Q6QAJ8 160 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 CCDC28AQ8IWP9 274 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 NRTNQ99748 197 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 VN1R3Q9BXE9 311 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 MMP28Q9H239 520 aa14.62□□□□□ -0.07
UPF1-204ENST00000596842 STOX2Q9P2F5 926 aaPredicted RBP14.62□□□□□ -0.07
UPF1-204ENST00000596842 RFXAPO00287 272 aa14.61□□□□□ -0.07
UPF1-204ENST00000596842 KMOO15229 486 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms