RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 TSNARE1Q96NA8 513 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 CAPS2Q9BXY5 557 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 NT5DC2Q9H857 520 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 ZDHHC11Q9H8X9 412 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 ADAP2Q9NPF8 381 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 NPDC1Q9NQX5 325 aaPredicted RBP13.02□□□□□ -0.33
VMP1-209ENST00000588915 PNO1Q9NRX1 252 aaKnown RBP13.02□□□□□ -0.33
VMP1-209ENST00000588915 ZNF223Q9UK11 482 aaPredicted RBP13.02□□□□□ -0.33
VMP1-209ENST00000588915 ERVK-11Q9UQG0 969 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 CLDN16Q9Y5I7 305 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 INTS1Q8N201 2190 aaKnown RBP13.02□□□□□ -0.33
VMP1-209ENST00000588915 LRIT2A6NDA9 550 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 A8MVJ9 347 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 DNALI1O14645 258 aaPredicted RBP13.01□□□□□ -0.33
VMP1-209ENST00000588915 C1GALT1C1LP0DN25 315 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 GNAZP19086 355 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 RFC3P40938 356 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 RAB38P57729 211 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 GPR85P60893 370 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 PPIAP62937 165 aaKnown RBP13.01□□□□□ -0.33
VMP1-209ENST00000588915 BTN3A2P78410 334 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 PMPCAQ10713 525 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 ELAVL1Q15717 326 aaKnown RBP13.01□□□□□ -0.33
VMP1-209ENST00000588915 GXYLT1Q4G148 440 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 TOR1AIP1Q5JTV8 583 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 NDUFAF5Q5TEU4 345 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 TMIGD1Q6UXZ0 262 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 SLC22A16Q86VW1 577 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 KLHDC8AQ8IYD2 350 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 CLYBLQ8N0X4 340 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 ACTRT1Q8TDG2 376 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 DAZLQ92904 295 aaKnown RBP13.01□□□□□ -0.33
VMP1-209ENST00000588915 NCLNQ969V3 563 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 ZNF559Q9BR84 538 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 AICDAQ9GZX7 198 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 PPANQ9NQ55 473 aaKnown RBP13.01□□□□□ -0.33
VMP1-209ENST00000588915 HPF1Q9NWY4 346 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 KCMF1Q9P0J7 381 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 MYOTQ9UBF9 498 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 HCFC1P51610 2035 aa13.01□□□□□ -0.33
VMP1-209ENST00000588915 PHF3Q92576 2039 aaKnown RBP13□□□□□ -0.33
VMP1-209ENST00000588915 GOLGA6L10A0A0M3HER8 536 aa13□□□□□ -0.33
VMP1-209ENST00000588915 FAM221AA4D161 298 aa13□□□□□ -0.33
VMP1-209ENST00000588915 CTAGE15A4D2H0 777 aa13□□□□□ -0.33
VMP1-209ENST00000588915 TMEM200CA6NKL6 621 aa13□□□□□ -0.33
VMP1-209ENST00000588915 FIGNL2A6NMB9 653 aa13□□□□□ -0.33
VMP1-209ENST00000588915 C4orf51C9J302 202 aa13□□□□□ -0.33
VMP1-209ENST00000588915 BCKDKO14874 412 aa13□□□□□ -0.33
VMP1-209ENST00000588915 B3GALT2O43825 422 aa13□□□□□ -0.33
VMP1-209ENST00000588915 CTNSO60931 367 aa13□□□□□ -0.33
VMP1-209ENST00000588915 CLEC3AO75596 197 aa13□□□□□ -0.33
VMP1-209ENST00000588915 KRT38O76015 456 aa13□□□□□ -0.33
VMP1-209ENST00000588915 IGHG3P01860 377 aa13□□□□□ -0.33
VMP1-209ENST00000588915 ZNF37AP17032 561 aaPredicted RBP13□□□□□ -0.33
VMP1-209ENST00000588915 ILF2Q12905 390 aaKnown RBP13□□□□□ -0.33
VMP1-209ENST00000588915 RUNX2Q13950 521 aa13□□□□□ -0.33
VMP1-209ENST00000588915 FRG1Q14331 258 aaKnown RBP13□□□□□ -0.33
VMP1-209ENST00000588915 PPP1R7Q15435 360 aa13□□□□□ -0.33
VMP1-209ENST00000588915 ADPRMQ3LIE5 342 aa13□□□□□ -0.33
VMP1-209ENST00000588915 GK5Q6ZS86 529 aa13□□□□□ -0.33
VMP1-209ENST00000588915 CTAGE6Q86UF2 777 aa13□□□□□ -0.33
VMP1-209ENST00000588915 LRRC8AQ8IWT6 810 aa13□□□□□ -0.33
VMP1-209ENST00000588915 KRT78Q8N1N4 520 aa13□□□□□ -0.33
VMP1-209ENST00000588915 MORN4Q8NDC4 146 aa13□□□□□ -0.33
VMP1-209ENST00000588915 MYRIPQ8NFW9 859 aa13□□□□□ -0.33
VMP1-209ENST00000588915 OR2L5Q8NG80 312 aa13□□□□□ -0.33
VMP1-209ENST00000588915 OR2M7Q8NG81 312 aa13□□□□□ -0.33
VMP1-209ENST00000588915 OR8K3Q8NH51 312 aa13□□□□□ -0.33
VMP1-209ENST00000588915 ASB15Q8WXK1 588 aa13□□□□□ -0.33
VMP1-209ENST00000588915 LRRC39Q96DD0 335 aa13□□□□□ -0.33
VMP1-209ENST00000588915 MS4A6EQ96DS6 147 aa13□□□□□ -0.33
VMP1-209ENST00000588915 SGCZQ96LD1 299 aa13□□□□□ -0.33
VMP1-209ENST00000588915 UCK2Q9BZX2 261 aa13□□□□□ -0.33
VMP1-209ENST00000588915 DEFB127Q9H1M4 99 aa13□□□□□ -0.33
VMP1-209ENST00000588915 DEPPQ9NTK1 212 aa13□□□□□ -0.33
VMP1-209ENST00000588915 RYDENQ9NUL5 291 aaKnown RBP13□□□□□ -0.33
VMP1-209ENST00000588915 PPP2R2CQ9Y2T4 447 aa13□□□□□ -0.33
VMP1-209ENST00000588915 OARD1Q9Y530 152 aa13□□□□□ -0.33
VMP1-209ENST00000588915 CLCA3PQ9Y6N3 262 aa13□□□□□ -0.33
VMP1-209ENST00000588915 ZNF407Q9C0G0 2248 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 A0A1B0GVC2 190 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 NKX2-6A6NCS4 301 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 ERI3O43414 337 aaKnown RBP12.99□□□□□ -0.33
VMP1-209ENST00000588915 KLK8O60259 260 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 OR2J2O76002 312 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 PDE9AO76083 593 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 GLSO94925 669 aaPredicted RBP12.99□□□□□ -0.33
VMP1-209ENST00000588915 CNR1P21554 472 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 ACVR2AP27037 513 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 NUP107P57740 925 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 CCZ1BP86790 482 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 CCZ1P86791 482 aaPredicted RBP12.99□□□□□ -0.33
VMP1-209ENST00000588915 PLGLB1Q02325 96 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 SLC13A2Q13183 592 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 EFTUD2Q15029 972 aaKnown RBP eCLIP12.99□□□□□ -0.33
VMP1-209ENST00000588915 HYAL4Q2M3T9 481 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 MSS51Q4VC12 460 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 HSDL2Q6YN16 418 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 SLCO4C1Q6ZQN7 724 aa12.99□□□□□ -0.33
VMP1-209ENST00000588915 ADAMTSL2Q86TH1 951 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms