RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CREBBPQ92793 2442 aa19.14■□□□□ 0.66
SHMT1-209ENST00000582653 ANKDD1BA6NHY2 528 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 SAGE2PA6NJ88 616 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 CCNT2O60583 730 aaKnown RBP19.14■□□□□ 0.65
SHMT1-209ENST00000582653 PRF1P14222 555 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 EPORP19235 508 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 CD22P20273 847 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 TPP2P29144 1249 aaPredicted RBP19.14■□□□□ 0.65
SHMT1-209ENST00000582653 HNRNPFP52597 415 aaKnown RBP19.14■□□□□ 0.65
SHMT1-209ENST00000582653 SLC7A5Q01650 507 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 CAV1Q03135 178 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 DLG1Q12959 904 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 EFTUD2Q15029 972 aaKnown RBP eCLIP19.14■□□□□ 0.65
SHMT1-209ENST00000582653 XKR6Q5GH73 641 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 XKRXQ6PP77 449 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 Q6ZPB1 254 aaPredicted RBP19.14■□□□□ 0.65
SHMT1-209ENST00000582653 GALNTL5Q7Z4T8 443 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 PNPLA5Q7Z6Z6 429 aaPredicted RBP19.14■□□□□ 0.65
SHMT1-209ENST00000582653 SPPL2CQ8IUH8 684 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 SRRM1Q8IYB3 904 aaKnown RBP19.14■□□□□ 0.65
SHMT1-209ENST00000582653 FAM98AQ8NCA5 519 aaKnown RBP19.14■□□□□ 0.65
SHMT1-209ENST00000582653 TMEM52Q8NDY8 209 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 KIAA1191Q96A73 305 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 FRMD6Q96NE9 622 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 QRFPRQ96P65 431 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 RAB17Q9H0T7 212 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 ALG9Q9H6U8 611 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 CHST11Q9NPF2 352 aa19.14■□□□□ 0.65
SHMT1-209ENST00000582653 MYO9AB2RTY4 2548 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 CSMD1Q96PZ7 3565 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 TGFBR3LH3BV60 316 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 ASNA1O43681 348 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 CLEC3AO75596 197 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 SLC35E2BP0CK96 405 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 TNFRSF8P28908 595 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 PPP2R1BP30154 601 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 MLF1P58340 268 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 SLMAPQ14BN4 828 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 C3AR1Q16581 482 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 MAPKAPK3Q16644 382 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 PDK4Q16654 411 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 ZNF630Q2M218 657 aaPredicted RBP19.13■□□□□ 0.65
SHMT1-209ENST00000582653 CDKL4Q5MAI5 379 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 BNC2Q6ZN30 1099 aaPredicted RBP19.13■□□□□ 0.65
SHMT1-209ENST00000582653 RAPH1Q70E73 1250 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 ISCA2Q86U28 154 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 ARMC10Q8N2F6 343 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 PDPRQ8NCN5 879 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 ADAMTS18Q8TE60 1221 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 PTCD3Q96EY7 689 aaKnown RBP19.13■□□□□ 0.65
SHMT1-209ENST00000582653 F2RL3Q96RI0 385 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 REXO4Q9GZR2 422 aaKnown RBP19.13■□□□□ 0.65
SHMT1-209ENST00000582653 TSPAN10Q9H1Z9 355 aaPredicted RBP19.13■□□□□ 0.65
SHMT1-209ENST00000582653 EHD1Q9H4M9 534 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 SH3BGRL2Q9UJC5 107 aa19.13■□□□□ 0.65
SHMT1-209ENST00000582653 LRBAP50851 2863 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 ESYT3A0FGR9 886 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 NPIPA5E9PKD4 350 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 B3GALT2O43825 422 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 MYO1DO94832 1006 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 S100BP04271 92 aaPredicted RBP19.12■□□□□ 0.65
SHMT1-209ENST00000582653 ESRRAP11474 423 aaPredicted RBP19.12■□□□□ 0.65
SHMT1-209ENST00000582653 TFEBP19484 476 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 AGAP20933 346 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 GSTM2P28161 218 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 GRNP28799 593 aaKnown RBP19.12■□□□□ 0.65
SHMT1-209ENST00000582653 TRHRP34981 398 aaPredicted RBP19.12■□□□□ 0.65
SHMT1-209ENST00000582653 CYB561P49447 251 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 NAA30Q147X3 362 aaPredicted RBP19.12■□□□□ 0.65
SHMT1-209ENST00000582653 ADPRMQ3LIE5 342 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 ZNF227Q86WZ6 799 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 SIAH3Q8IW03 269 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 MCEMP1Q8IX19 187 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 FAM47BQ8NA70 645 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 ARMC2Q8NEN0 867 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 OR2L5Q8NG80 312 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 MRRFQ96E11 262 aaKnown RBP19.12■□□□□ 0.65
SHMT1-209ENST00000582653 NPLQ9BXD5 320 aaPredicted RBP19.12■□□□□ 0.65
SHMT1-209ENST00000582653 CD244Q9BZW8 370 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 PHACTR1Q9C0D0 580 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 PITHD1Q9GZP4 211 aaPredicted RBP19.12■□□□□ 0.65
SHMT1-209ENST00000582653 PRTFDC1Q9NRG1 225 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 PNO1Q9NRX1 252 aaKnown RBP19.12■□□□□ 0.65
SHMT1-209ENST00000582653 NPIPA1Q9UND3 350 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 MMACHCQ9Y4U1 282 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 CLDN16Q9Y5I7 305 aa19.12■□□□□ 0.65
SHMT1-209ENST00000582653 MYOCOSA0A1B0GUC4 107 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 CERS1P27544 350 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 HTR1EP28566 365 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 STX2P32856 288 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 RAB38P57729 211 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 IRF8Q02556 426 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 GUCY2DQ02846 1103 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 SLC13A2Q13183 592 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 CHIT1Q13231 466 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 TRIM40Q6P9F5 258 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 ABHD17CQ6PCB6 329 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 ZNF572Q7Z3I7 529 aaPredicted RBP19.11■□□□□ 0.65
SHMT1-209ENST00000582653 SCUBE1Q8IWY4 988 aa19.11■□□□□ 0.65
SHMT1-209ENST00000582653 APCDD1LQ8NCL9 501 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms