RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 SLC25A12O75746 678 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 TBX6O95947 436 aaPredicted RBP13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 CCDC166P0CW27 439 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 CRABP2P29373 138 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 SSTR1P30872 391 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 HNRNPH1P31943 449 aaKnown RBP13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 PTGER4P35408 488 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 KCNC1P48547 511 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 MTTPP55157 894 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 BTG2P78543 158 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 ALDH6A1Q02252 535 aaKnown RBP13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 ZNF460Q14592 562 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 ELAVL1Q15717 326 aaKnown RBP13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 TMEM35AQ53FP2 167 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 TOR1AIP1Q5JTV8 583 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 C1QL3Q5VWW1 255 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 ZNF787Q6DD87 383 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 SPINK14Q6IE38 97 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 TRIM40Q6P9F5 258 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 ABHD17CQ6PCB6 329 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 CTAGE6Q86UF2 777 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 SPPL2CQ8IUH8 684 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 GHDCQ8N2G8 530 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 OR8K3Q8NH51 312 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 C16orf52Q8NHV5 167 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 UBTD2Q8WUN7 234 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 TMEM125Q96AQ2 219 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 VMP1Q96GC9 406 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 KCNC2Q96PR1 638 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 TMEM79Q9BSE2 394 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 DEFB126Q9BYW3 111 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 REXO4Q9GZR2 422 aaKnown RBP13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 CDCP1Q9H5V8 836 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 NMRAL1Q9HBL8 299 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 DAPP1Q9UN19 280 aa13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 KLF13Q9Y2Y9 288 aaPredicted RBP13.55□□□□□ -0.24
SMARCE1-216ENST00000580419 ENO4A6NNW6 628 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 CXorf49A8MYA2 514 aaPredicted RBP13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 C4orf51C9J302 202 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 CCL21O00585 134 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 CYR61O00622 381 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 ERI3O43414 337 aaKnown RBP13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 ASNA1O43681 348 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 CTNSO60931 367 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 F10P00742 488 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 MAOAP21397 527 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 SAT1P21673 171 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 TPP2P29144 1249 aaPredicted RBP13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 STX2P32856 288 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 GDF5P43026 501 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 ETF1P62495 437 aaKnown RBP13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 BTN3A2P78410 334 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 OC90Q02509 493 aaPredicted RBP13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 SLBPQ14493 270 aaKnown RBP eCLIP13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 PDK4Q16654 411 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 HIST2H2ACQ16777 129 aaPredicted RBP13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 ZNF630Q2M218 657 aaPredicted RBP13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 FCRLBQ6BAA4 426 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 HIST2H2AA3Q6FI13 130 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 GALNTL5Q7Z4T8 443 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 ISCA2Q86U28 154 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 ZNF227Q86WZ6 799 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 LAS2Q8IYD9 372 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 TMEM132CQ8N3T6 1108 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 MORN4Q8NDC4 146 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 RHEBL1Q8TAI7 183 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 CCDC120Q96HB5 630 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 TBCDQ9BTW9 1192 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 RBCK1Q9BYM8 510 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 SAYSD1Q9NPB0 183 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 NECTIN3Q9NQS3 549 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 PSD3Q9NYI0 1048 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 WWOXQ9NZC7 414 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 VTI1BQ9UEU0 232 aa13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 ZNF490Q9ULM2 529 aaPredicted RBP13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 YARS2Q9Y2Z4 477 aaKnown RBP13.54□□□□□ -0.24
SMARCE1-216ENST00000580419 TRGV8A0A0C4DH27 118 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 KLRC4-KLRK1H3BQV0 150 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 RAD51CO43502 376 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 COL8A1P27658 744 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 SMSP52788 366 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 GPX6P59796 221 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 OLR1P78380 273 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 GUCY2DQ02846 1103 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 RUNX2Q13950 521 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 SERTAD2Q14140 314 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 SP5Q6BEB4 398 aaPredicted RBP13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 VN1R5Q7Z5H4 357 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 ZFP62Q8NB50 900 aaPredicted RBP13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 DAZLQ92904 295 aaKnown RBP13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 MAGED4Q96JG8 741 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 CD244Q9BZW8 370 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 PRDM7Q9NQW5 492 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 PRTFDC1Q9NRG1 225 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 PLSCR2Q9NRY7 297 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 NUDT4Q9NZJ9 180 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 KCMF1Q9P0J7 381 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 PYCARDQ9ULZ3 195 aa13.53□□□□□ -0.24
SMARCE1-216ENST00000580419 CSMD1Q96PZ7 3565 aa13.52□□□□□ -0.24
SMARCE1-216ENST00000580419 SYCE1LA8MT33 242 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms