RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 OTCP00480 354 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 PTX3P26022 381 aaPredicted RBP18.18■□□□□ 0.5
SS18-208ENST00000577751 CERS1P27544 350 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 TSFMP43897 325 aaKnown RBP18.18■□□□□ 0.5
SS18-208ENST00000577751 ARFIP1P53367 373 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 RPS13P62277 151 aaKnown RBP18.18■□□□□ 0.5
SS18-208ENST00000577751 IFFO1Q0D2I5 559 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 RAPSNQ13702 412 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 DDX39BQ13838 428 aaKnown RBP18.18■□□□□ 0.5
SS18-208ENST00000577751 ABRAXAS2Q15018 415 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 NSDHLQ15738 373 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 CCDC153Q494R4 210 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 VWA5B1Q5TIE3 1220 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 ZNF793Q6ZN11 406 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 MILR1Q7Z6M3 343 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 TRABD2AQ86V40 505 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 MAGEB10Q96LZ2 347 aaPredicted RBP18.18■□□□□ 0.5
SS18-208ENST00000577751 WDR77Q9BQA1 342 aaPredicted RBP18.18■□□□□ 0.5
SS18-208ENST00000577751 TUBB6Q9BUF5 446 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 LHPPQ9H008 270 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 OR51B5Q9H339 312 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 RIC8BQ9NVN3 520 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 MKS1Q9NXB0 559 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 ANAPC2Q9UJX6 822 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 DAPP1Q9UN19 280 aa18.18■□□□□ 0.5
SS18-208ENST00000577751 PSMD12O00232 456 aaPredicted RBP18.17■□□□□ 0.5
SS18-208ENST00000577751 COPEO14579 308 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 PLIN3O60664 434 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 PRMT3O60678 531 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 B4GALT2O60909 372 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 SUPT7LO94864 414 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 TSPAN8P19075 237 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 ATP5A1P25705 553 aaKnown RBP18.17■□□□□ 0.5
SS18-208ENST00000577751 NEK2P51955 445 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 LIM2P55344 173 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 RAB38P57729 211 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 BTG2P78543 158 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 PHEXP78562 749 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 KLRB1Q12918 225 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 CUL3Q13618 768 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 C10orf62Q5T681 223 aaPredicted RBP18.17■□□□□ 0.5
SS18-208ENST00000577751 FRG2Q64ET8 278 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 LETMD1Q6P1Q0 360 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 ZYG11AQ6WRX3 759 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 KBTBD2Q8IY47 623 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 C4orf33Q8N1A6 199 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 ACOT4Q8N9L9 421 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 MYRIPQ8NFW9 859 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 ADAMTS18Q8TE60 1221 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 TSLPQ969D9 159 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 CCDC126Q96EE4 140 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 THOC3Q96J01 351 aaKnown RBP18.17■□□□□ 0.5
SS18-208ENST00000577751 FRG2BQ96QU4 278 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 COPS7BQ9H9Q2 264 aaPredicted RBP18.17■□□□□ 0.5
SS18-208ENST00000577751 LYRM4Q9HD34 91 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 KCMF1Q9P0J7 381 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 PLAAQ9Y263 795 aa18.17■□□□□ 0.5
SS18-208ENST00000577751 IGKV3D-11A0A0A0MRZ8 115 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 RTCAO00442 366 aaKnown RBP18.16■□□□□ 0.5
SS18-208ENST00000577751 CYR61O00622 381 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 PLPP1O14494 284 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 SH3BGRLO75368 114 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 ETHE1O95571 254 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 SERPINA7P05543 415 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 PRR35P0CG20 571 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 ICAM2P13598 275 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 HIST1H1TP22492 207 aaPredicted RBP18.16■□□□□ 0.5
SS18-208ENST00000577751 ARL1P40616 181 aaPredicted RBP18.16■□□□□ 0.5
SS18-208ENST00000577751 AP5B1Q2VPB7 878 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 OR4C11Q6IEV9 310 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 IGFL3Q6UXB1 125 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 RIPOR1Q6ZS17 1223 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 RDH11Q8TC12 318 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 TRPC4APQ8TEL6 797 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 PPP4R1Q8TF05 950 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 PSMF1Q92530 271 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 RGMAQ96B86 450 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 PTCHD1Q96NR3 888 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 ZNF717Q9BY31 904 aaPredicted RBP18.16■□□□□ 0.5
SS18-208ENST00000577751 PRDM9Q9NQV7 894 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 TRPS1Q9UHF7 1281 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 MMACHCQ9Y4U1 282 aa18.16■□□□□ 0.5
SS18-208ENST00000577751 IGHV3-20A0A0C4DH32 117 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 SAP18O00422 153 aaKnown RBP18.15■□□□□ 0.5
SS18-208ENST00000577751 SEC24DO94855 1032 aaPredicted RBP18.15■□□□□ 0.5
SS18-208ENST00000577751 ALPPP05187 535 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 MYL2P10916 166 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 SFT2D3Q587I9 215 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 PLAG1Q6DJT9 500 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 IGFL2Q6UWQ7 119 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 ZNF605Q86T29 641 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 SCUBE1Q8IWY4 988 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 ZNF595Q8IYB9 648 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 AMER2Q8N7J2 671 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 BANPQ8N9N5 519 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 TEX19Q8NA77 164 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 TMEM52Q8NDY8 209 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 MTFMTQ96DP5 389 aaKnown RBP18.15■□□□□ 0.5
SS18-208ENST00000577751 ZNF382Q96SR6 550 aa18.15■□□□□ 0.5
SS18-208ENST00000577751 C12orf65Q9H3J6 166 aaKnown RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms