RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PWWP2AQ96N64 755 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 EGFL8Q99944 293 aa19.62■□□□□ 0.73
VPS53-216ENST00000574029 YARS2Q9Y2Z4 477 aaKnown RBP19.62■□□□□ 0.73
VPS53-216ENST00000574029 LRIT2A6NDA9 550 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 TMEM200CA6NKL6 621 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 H2AFYO75367 372 aaKnown RBP19.61■□□□□ 0.73
VPS53-216ENST00000574029 GNAZP19086 355 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 GSTM2P28161 218 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 PPP2R1BP30154 601 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 HNRNPH1P31943 449 aaKnown RBP19.61■□□□□ 0.73
VPS53-216ENST00000574029 SLC6A12P48065 614 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 SSR4P51571 173 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 HNRNPFP52597 415 aaKnown RBP19.61■□□□□ 0.73
VPS53-216ENST00000574029 RAB38P57729 211 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 MORF4L2Q15014 288 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 ARHGAP11AQ6P4F7 1023 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 TMIGD1Q6UXZ0 262 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 SPNS3Q6ZMD2 512 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 CEP128Q6ZU80 1094 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 ZC3HC1Q86WB0 502 aaKnown RBP19.61■□□□□ 0.73
VPS53-216ENST00000574029 GPALPP1Q8IXQ4 340 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 TMEM52Q8NDY8 209 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 TTLQ8NG68 377 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 ASB5Q8WWX0 329 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 LRRC39Q96DD0 335 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 SEC16BQ96JE7 1060 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 QRFPRQ96P65 431 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 CCDC77Q9BR77 488 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 TP63Q9H3D4 680 aaPredicted RBP19.61■□□□□ 0.73
VPS53-216ENST00000574029 ADAP2Q9NPF8 381 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 TIMMDC1Q9NPL8 285 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 DEPPQ9NTK1 212 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 KCMF1Q9P0J7 381 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 SNX12Q9UMY4 172 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 PSAT1Q9Y617 370 aa19.61■□□□□ 0.73
VPS53-216ENST00000574029 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.61■□□□□ 0.73
VPS53-216ENST00000574029 TACC2O95359 2948 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 A0A0G2JN53 185 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 CLDN4O14493 209 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 FANCGO15287 622 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 ERI3O43414 337 aaKnown RBP19.6■□□□□ 0.73
VPS53-216ENST00000574029 PRKNO60260 465 aaPredicted RBP19.6■□□□□ 0.73
VPS53-216ENST00000574029 ZFAND5O76080 213 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 WDR47O94967 919 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 TUBB4AP04350 444 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 SAT1P21673 171 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 GDF5P43026 501 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 ZNF460Q14592 562 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 C18orf21Q32NC0 220 aaPredicted RBP19.6■□□□□ 0.73
VPS53-216ENST00000574029 PSD4Q8NDX1 1056 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 LILRB4Q8NHJ6 448 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 RHBDF1Q96CC6 855 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 NT5DC2Q9H857 520 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 RNF6Q9Y252 685 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 AKAP9Q99996 3911 aa19.6■□□□□ 0.73
VPS53-216ENST00000574029 CELSR1Q9NYQ6 3014 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 FAM95CA0A1B0GW59 222 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 B3GALT2O43825 422 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 CLEC3AO75596 197 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 PDE9AO76083 593 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 TBX6O95947 436 aaPredicted RBP19.59■□□□□ 0.73
VPS53-216ENST00000574029 CHRNB4P30926 498 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 TAS2R39P59534 338 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 TFF3Q07654 80 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 SLC13A2Q13183 592 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 SLBPQ14493 270 aaKnown RBP eCLIP19.59■□□□□ 0.73
VPS53-216ENST00000574029 ADPRMQ3LIE5 342 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 EMC4Q5J8M3 183 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 C16orf47Q6ZP98 133 aaPredicted RBP19.59■□□□□ 0.73
VPS53-216ENST00000574029 ADAMTSL2Q86TH1 951 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 ZNF595Q8IYB9 648 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 ANKRD49Q8WVL7 239 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 RND1Q92730 232 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 PITHD1Q9GZP4 211 aaPredicted RBP19.59■□□□□ 0.73
VPS53-216ENST00000574029 NPDC1Q9NQX5 325 aaPredicted RBP19.59■□□□□ 0.73
VPS53-216ENST00000574029 CTNNAL1Q9UBT7 734 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 ERVK-11Q9UQG0 969 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 C2CD3Q4AC94 2353 aa19.59■□□□□ 0.73
VPS53-216ENST00000574029 POLQO75417 2590 aa19.58■□□□□ 0.73
VPS53-216ENST00000574029 PHF3Q92576 2039 aaKnown RBP19.58■□□□□ 0.73
VPS53-216ENST00000574029 A0A088AWK7 358 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 PINLYPA6NC86 204 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 SYNDIG1LA6NDD5 238 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 A8MVJ9 347 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 CYR61O00622 381 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 OR2J2O76002 312 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 ZNF10P21506 573 aaPredicted RBP19.58■□□□□ 0.72
VPS53-216ENST00000574029 NR0B1P51843 470 aaKnown RBP19.58■□□□□ 0.72
VPS53-216ENST00000574029 GNG11P61952 73 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 MGAT5Q09328 741 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 TSNQ15631 228 aaKnown RBP19.58■□□□□ 0.72
VPS53-216ENST00000574029 ELAVL1Q15717 326 aaKnown RBP19.58■□□□□ 0.72
VPS53-216ENST00000574029 XKR6Q5GH73 641 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 PAOXQ6QHF9 649 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 FRA10AC1Q70Z53 315 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 KRT78Q8N1N4 520 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 TMEM132CQ8N3T6 1108 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 RPRMLQ8N4K4 120 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 FAM47BQ8NA70 645 aa19.58■□□□□ 0.72
VPS53-216ENST00000574029 OR2L5Q8NG80 312 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms