RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 GSTM5P46439 218 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 B4GALNT1Q00973 533 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 MICAQ29983 383 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 OLIG3Q7RTU3 272 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 DDX53Q86TM3 631 aaKnown RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 FAM124AQ86V42 546 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 CFAP206Q8IYR0 622 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 SIX5Q8N196 739 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 C19orf18Q8NEA5 215 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 BCL7CQ8WUZ0 217 aaPredicted RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 TMCO6Q96DC7 493 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 RDH14Q9HBH5 336 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 ZNF226Q9NYT6 803 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 CORO2BQ9UQ03 480 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 OR6C70A6NIJ9 312 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 NOTOA8MTQ0 251 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 TPD52L2O43399 206 aaKnown RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 CD22P20273 847 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 CD9P21926 228 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 CSNK1DP48730 415 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 WNT3P56703 355 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 SLC5A12Q1EHB4 618 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 TRIQKQ629K1 86 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 SYCE2Q6PIF2 218 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 C17orf99Q6UX52 265 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 VASH1Q7L8A9 365 aaPredicted RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 MMP21Q8N119 569 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 EXOSC8Q96B26 276 aaKnown RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 NACC2Q96BF6 587 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 EPYCQ99645 322 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 POLR2J3Q9H1A7 115 aaKnown RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 NMNAT1Q9HAN9 279 aaPredicted RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 SEMA3GQ9NS98 782 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 MUTYHQ9UIF7 546 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 TDRD15B5MCY1 1934 aaKnown RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 SLC35F4A4IF30 521 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 MANSC4A6NHS7 340 aaPredicted RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 ARHGEF9O43307 516 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 FZD6O60353 706 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 GASTP01350 101 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 MANFP55145 182 aaKnown RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 SNRPD2P62316 118 aaKnown RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 C5orf22Q49AR2 442 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 ZNF57Q68EA5 555 aaPredicted RBP13.89□□□□□ -0.19
VPS35-210ENST00000568784 MED27Q6P2C8 311 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 TMEM220Q6QAJ8 160 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 CEACAM20Q6UY09 585 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 C7orf34Q96L11 122 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 YIPF4Q9BSR8 244 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 KPNA3O00505 521 aaPredicted RBP13.88□□□□□ -0.19
VPS35-210ENST00000568784 GPX5O75715 221 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 CLEC2LP0C7M8 214 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 ZDHHC11BP0C7U3 371 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 RPS19P39019 145 aaKnown RBP13.88□□□□□ -0.19
VPS35-210ENST00000568784 SLAMF1Q13291 335 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 ZNF385BQ569K4 471 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 FAHD1Q6P587 224 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 RRM2BQ7LG56 351 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 POP5Q969H6 163 aaKnown RBP13.88□□□□□ -0.19
VPS35-210ENST00000568784 FYTTD1Q96QD9 318 aaKnown RBP13.88□□□□□ -0.19
VPS35-210ENST00000568784 SLC25A13Q9UJS0 675 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 PLAGL1Q9UM63 463 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 ADAMTS4O75173 837 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 PSIP1O75475 530 aaKnown RBP13.88□□□□□ -0.19
VPS35-210ENST00000568784 PDHA2P29803 388 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 RORCP51449 518 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 CRISP1P54107 249 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 PFN3P60673 137 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 SCN1BQ07699 218 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 VEZF1Q14119 521 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 NCF4Q15080 339 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 SPHARQ15513 63 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 SMU1Q2TAY7 513 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 DCST1Q5T197 706 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 TUBA3EQ6PEY2 450 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 WDR48Q8TAF3 677 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 NEIL2Q969S2 332 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 GABARAPL1Q9H0R8 117 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 ANKHQ9HCJ1 492 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 PRKAB1Q9Y478 270 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 ALPPL2P10696 532 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 PSKH1P11801 424 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 CHMP24386 653 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 BMPR1AP36894 532 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 MAPK8P45983 427 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 PTSQ03393 145 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 CRTC2Q53ET0 693 aaPredicted RBP13.88□□□□□ -0.19
VPS35-210ENST00000568784 CYB5D2Q8WUJ1 264 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 GEMIN6Q8WXD5 167 aaKnown RBP13.88□□□□□ -0.19
VPS35-210ENST00000568784 PHF21AQ96BD5 680 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 IL17FQ96PD4 163 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 KLF16Q9BXK1 252 aaPredicted RBP13.88□□□□□ -0.19
VPS35-210ENST00000568784 RANGRFQ9HD47 186 aaPredicted RBP13.88□□□□□ -0.19
VPS35-210ENST00000568784 CARD8Q9Y2G2 431 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 LOC285556D6RIA3 1793 aa13.88□□□□□ -0.19
VPS35-210ENST00000568784 CBSLP0DN79 551 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 MYL12AP19105 171 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 CD72P21854 359 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 CBSP35520 551 aa13.87□□□□□ -0.19
VPS35-210ENST00000568784 AP1S2P56377 157 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms