RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SLBPQ14493 270 aaKnown RBP eCLIP15.7■□□□□ 0.1
CLN3-211ENST00000564091 TERF2Q15554 542 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 TESK1Q15569 626 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 XKR6Q5GH73 641 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 SLCO4C1Q6ZQN7 724 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 PDIK1LQ8N165 341 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 FAM47BQ8NA70 645 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 ANKRD49Q8WVL7 239 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 MS4A6EQ96DS6 147 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 VMP1Q96GC9 406 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 TREX2Q9BQ50 279 aaPredicted RBP15.7■□□□□ 0.1
CLN3-211ENST00000564091 DEPPQ9NTK1 212 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 PPIEQ9UNP9 301 aaKnown RBP15.7■□□□□ 0.1
CLN3-211ENST00000564091 ERVK-11Q9UQG0 969 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 SPG11Q96JI7 2443 aa15.7■□□□□ 0.1
CLN3-211ENST00000564091 NCOA6Q14686 2063 aaPredicted RBP15.69■□□□□ 0.1
CLN3-211ENST00000564091 MYOCOSA0A1B0GUC4 107 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 PINLYPA6NC86 204 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 NKX2-6A6NCS4 301 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 LRIT2A6NDA9 550 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 TMEM200CA6NKL6 621 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 FAM90A27PA6NNH2 459 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 USP27XA6NNY8 438 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 H2AFYO75367 372 aaKnown RBP15.69■□□□□ 0.1
CLN3-211ENST00000564091 ZFAND5O76080 213 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 WDR47O94967 919 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 C1GALT1C1LP0DN25 315 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 SSR4P51571 173 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 PLA2G16P53816 162 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 TSNQ15631 228 aaKnown RBP15.69■□□□□ 0.1
CLN3-211ENST00000564091 STEAP4Q687X5 459 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 TMIGD1Q6UXZ0 262 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 CLNKQ7Z7G1 428 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 CCDC71Q8IV32 467 aaPredicted RBP15.69■□□□□ 0.1
CLN3-211ENST00000564091 KLHDC8AQ8IYD2 350 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 NKAPQ8N5F7 415 aaKnown RBP15.69■□□□□ 0.1
CLN3-211ENST00000564091 GAL3ST3Q96A11 431 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 CCDC77Q9BR77 488 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 TIMMDC1Q9NPL8 285 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 PLSCR2Q9NRY7 297 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 SNX12Q9UMY4 172 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 RNF6Q9Y252 685 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 YARS2Q9Y2Z4 477 aaKnown RBP15.69■□□□□ 0.1
CLN3-211ENST00000564091 OARD1Q9Y530 152 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 TEX264Q9Y6I9 313 aa15.69■□□□□ 0.1
CLN3-211ENST00000564091 FAM95CA0A1B0GW59 222 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 NCF1BA6NI72 391 aaPredicted RBP15.68■□□□□ 0.1
CLN3-211ENST00000564091 FAM166BA8MTA8 275 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 A8MVJ9 347 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 NCF1CA8MVU1 366 aaPredicted RBP15.68■□□□□ 0.1
CLN3-211ENST00000564091 CLDN4O14493 209 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 OR2J2O76002 312 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 OR6B1O95007 311 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 TBX6O95947 436 aaPredicted RBP15.68■□□□□ 0.1
CLN3-211ENST00000564091 TUBB4AP04350 444 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 NCF1P14598 390 aaPredicted RBP15.68■□□□□ 0.1
CLN3-211ENST00000564091 GNAZP19086 355 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 SLC6A12P48065 614 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 HNMTP50135 292 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 HSD17B7P56937 341 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 RAB38P57729 211 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 PPIAP62937 165 aaKnown RBP15.68■□□□□ 0.1
CLN3-211ENST00000564091 CDKL1Q00532 357 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 MORF4L2Q15014 288 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 EMC4Q5J8M3 183 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 TMEM211Q6ICI0 200 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 ARHGAP11AQ6P4F7 1023 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 IL20RBQ6UXL0 311 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 FRA10AC1Q70Z53 315 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 ZC3HC1Q86WB0 502 aaKnown RBP15.68■□□□□ 0.1
CLN3-211ENST00000564091 ANKMY2Q8IV38 441 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 PSD4Q8NDX1 1056 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 LILRB4Q8NHJ6 448 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 ANKRD7Q92527 254 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 SLCO2A1Q92959 643 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 RHBDF1Q96CC6 855 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 QRFPRQ96P65 431 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 CSF3RQ99062 836 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 NPLQ9BXD5 320 aaPredicted RBP15.68■□□□□ 0.1
CLN3-211ENST00000564091 NPDC1Q9NQX5 325 aaPredicted RBP15.68■□□□□ 0.1
CLN3-211ENST00000564091 HPF1Q9NWY4 346 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 CTNNAL1Q9UBT7 734 aa15.68■□□□□ 0.1
CLN3-211ENST00000564091 A0A0G2JMM0 328 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 A0A1W2PPB8 328 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 A0A1W2PRS3 328 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 KIR3DP1A8MWS1 328 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 G3V3Y1 287 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 WWP2O00308 870 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 B3GALT2O43825 422 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 IFNA16P05015 189 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 IGFBP2P18065 325 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 CERS1P27544 350 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 CHRNB4P30926 498 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 PLGLB1Q02325 96 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 MGAT5Q09328 741 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 PMPCAQ10713 525 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 BMPR2Q13873 1038 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 FBXO48Q5FWF7 155 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 ADNP2Q6IQ32 1131 aa15.67■□□□□ 0.1
CLN3-211ENST00000564091 VN1R5Q7Z5H4 357 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms