RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 AVPR1BP47901 424 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 SLC1A6P48664 564 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 HNRNPH2P55795 449 aaKnown RBP9.24□□□□□ -0.93
CLK3-208ENST00000562626 ABCE1P61221 599 aaKnown RBP9.24□□□□□ -0.93
CLK3-208ENST00000562626 STXBP1P61764 594 aaKnown RBP9.24□□□□□ -0.93
CLK3-208ENST00000562626 PPP2R2AP63151 447 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 BTG2P78543 158 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 KLC1Q07866 573 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 IFT88Q13099 833 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 CUL3Q13618 768 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 HERC3Q15034 1050 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 SH2D4BQ5SQS7 431 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 TRIM40Q6P9F5 258 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 Q6ZSR9 355 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 ABHD13Q7L211 337 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 PPP1R32Q7Z5V6 425 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 MMP21Q8N119 569 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 ACOT4Q8N9L9 421 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 FKBP10Q96AY3 582 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 REPS1Q96D71 796 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 APIPQ96GX9 242 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 SLC45A3Q96JT2 553 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 C3orf30Q96M34 536 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 DPH2Q9BQC3 489 aaPredicted RBP9.24□□□□□ -0.93
CLK3-208ENST00000562626 YIPF2Q9BWQ6 316 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 PNPOQ9NVS9 261 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 KCMF1Q9P0J7 381 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 PPT2Q9UMR5 302 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 SLC12A4Q9UP95 1085 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 MAP4K5Q9Y4K4 846 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 DNAJC15Q9Y5T4 150 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 ATMQ13315 3056 aa9.24□□□□□ -0.93
CLK3-208ENST00000562626 MYOCOSA0A1B0GUC4 107 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 A0A1W2PS29 197 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 TMEM114B3SHH9 223 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 C21orf140B9A014 251 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 C9J4A7 227 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 RRP8O43159 456 aaKnown RBP9.23□□□□□ -0.93
CLK3-208ENST00000562626 SNNO75324 88 aaPredicted RBP9.23□□□□□ -0.93
CLK3-208ENST00000562626 ULK1O75385 1050 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 SKAP2O75563 359 aaPredicted RBP9.23□□□□□ -0.93
CLK3-208ENST00000562626 HSPA4LO95757 839 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 KRT6AP02538 564 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 KRT6BP04259 564 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 FGF4P08620 206 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 PRKAR1AP10644 381 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 UROSP10746 265 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 NR1D1P20393 614 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 HIST1H1TP22492 207 aaPredicted RBP9.23□□□□□ -0.93
CLK3-208ENST00000562626 PTX3P26022 381 aaPredicted RBP9.23□□□□□ -0.93
CLK3-208ENST00000562626 SERPINB1P30740 379 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 SSR2P43308 183 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 KRT6CP48668 564 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 LIM2P55344 173 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 NAA20P61599 178 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 BTKQ06187 659 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 ASPHQ12797 758 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 STX3Q13277 289 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 TMEM35AQ53FP2 167 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 C18orf63Q68DL7 685 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 FAAH2Q6GMR7 532 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 OR4C11Q6IEV9 310 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 MRM1Q6IN84 353 aaKnown RBP9.23□□□□□ -0.93
CLK3-208ENST00000562626 LANCL3Q6ZV70 420 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 COMMD6Q7Z4G1 85 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 METTL4Q8N3J2 472 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 C1orf52Q8N6N3 182 aaKnown RBP9.23□□□□□ -0.93
CLK3-208ENST00000562626 FAM47BQ8NA70 645 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 OR2Y1Q8NGV0 311 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 TWIST2Q8WVJ9 160 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 TSLPQ969D9 159 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 RGMAQ96B86 450 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 C8orf44Q96CB5 159 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 C11orf24Q96F05 449 aaPredicted RBP9.23□□□□□ -0.93
CLK3-208ENST00000562626 KCNC2Q96PR1 638 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 SERPINI1Q99574 410 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 TRMOQ9BU70 441 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 GPR87Q9BY21 358 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 TGIF2Q9GZN2 237 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 VN1R1Q9GZP7 353 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 WDR54Q9H977 334 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 BRF2Q9HAW0 419 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 TEX10Q9NXF1 929 aaPredicted RBP9.23□□□□□ -0.93
CLK3-208ENST00000562626 PSD3Q9NYI0 1048 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 NKIRAS1Q9NYS0 192 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 ZNF282Q9UDV7 671 aaPredicted RBP9.23□□□□□ -0.93
CLK3-208ENST00000562626 ADGRE2Q9UHX3 823 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 FBXW2Q9UKT8 454 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 DAPP1Q9UN19 280 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 CDC14AQ9UNH5 594 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 SNX6Q9UNH7 406 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 STK38LQ9Y2H1 464 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 TRAF6Q9Y4K3 522 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 ASB4Q9Y574 426 aa9.23□□□□□ -0.93
CLK3-208ENST00000562626 IGHV3-20A0A0C4DH32 117 aa9.22□□□□□ -0.93
CLK3-208ENST00000562626 SERTM1A2A2V5 107 aa9.22□□□□□ -0.93
CLK3-208ENST00000562626 CDC14CA4D256 554 aa9.22□□□□□ -0.93
CLK3-208ENST00000562626 IDSB3KWA1 339 aa9.22□□□□□ -0.93
CLK3-208ENST00000562626 K7ENP7 123 aa9.22□□□□□ -0.93
CLK3-208ENST00000562626 CYR61O00622 381 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms