RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 RAB10P61026 200 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 ATP6V0D1P61421 351 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 ILF2Q12905 390 aaKnown RBP9.55□□□□□ -0.88
LDLR-214ENST00000560628 DLG1Q12959 904 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 SLC13A2Q13183 592 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 PDK4Q16654 411 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.55□□□□□ -0.885e-6■□□□□ 10.9
LDLR-214ENST00000560628 KBTBD12Q3ZCT8 623 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 KRTCAP3Q53RY4 240 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 RNFT1Q5M7Z0 435 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 GRTP1Q5TC63 336 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 ABHD17CQ6PCB6 329 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 SYT10Q6XYQ8 523 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 C16orf47Q6ZP98 133 aaPredicted RBP9.55□□□□□ -0.88
LDLR-214ENST00000560628 RAPH1Q70E73 1250 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 CYS1Q717R9 158 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 CLNKQ7Z7G1 428 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 CMC1Q7Z7K0 106 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 MRGPRGQ86SM5 289 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 ZNF227Q86WZ6 799 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 LGI4Q8N135 537 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 FAM98AQ8NCA5 519 aaKnown RBP9.55□□□□□ -0.88
LDLR-214ENST00000560628 OR2L5Q8NG80 312 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 FBXO25Q8TCJ0 367 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 FBF1Q8TES7 1133 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 KIAA1191Q96A73 305 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 MRRFQ96E11 262 aaKnown RBP9.55□□□□□ -0.88
LDLR-214ENST00000560628 UBXN10Q96LJ8 280 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 GPR137Q96N19 417 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 FRMD6Q96NE9 622 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 NPLQ9BXD5 320 aaPredicted RBP9.55□□□□□ -0.88
LDLR-214ENST00000560628 ALG9Q9H6U8 611 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 LIN28AQ9H9Z2 209 aaKnown RBP9.55□□□□□ -0.88
LDLR-214ENST00000560628 TINAGQ9UJW2 476 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 FBXW2Q9UKT8 454 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 UTP11Q9Y3A2 253 aaKnown RBP9.55□□□□□ -0.88
LDLR-214ENST00000560628 MMACHCQ9Y4U1 282 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 ASB1Q9Y576 335 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 CYR61O00622 381 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 FCHO1O14526 889 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 HNRNPRO43390 633 aaKnown RBP9.54□□□□□ -0.88
LDLR-214ENST00000560628 ASNA1O43681 348 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 NME2P1O60361 137 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 IFNA16P05015 189 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 GSTA2P09210 222 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 ESRRAP11474 423 aaPredicted RBP9.54□□□□□ -0.88
LDLR-214ENST00000560628 PRF1P14222 555 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 EPORP19235 508 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 TFEBP19484 476 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 NME2P22392 152 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 RFC3P40938 356 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 CLCN2P51788 898 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 MTTPP55157 894 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 LIM2P55344 173 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 HSF1Q00613 529 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 SLC7A5Q01650 507 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 IRF8Q02556 426 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 CHIT1Q13231 466 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 BMPR2Q13873 1038 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 SLMAPQ14BN4 828 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 EFTUD2Q15029 972 aaKnown RBP eCLIP9.54□□□□□ -0.88
LDLR-214ENST00000560628 ZKSCAN8Q15776 578 aaPredicted RBP9.54□□□□□ -0.88
LDLR-214ENST00000560628 HIST2H2ACQ16777 129 aaPredicted RBP9.54□□□□□ -0.88
LDLR-214ENST00000560628 CDKL4Q5MAI5 379 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 HIST2H2AA3Q6FI13 130 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 TRIM40Q6P9F5 258 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 ZDHHC24Q6UX98 284 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 ISCA2Q86U28 154 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 SPPL2CQ8IUH8 684 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 SIAH3Q8IW03 269 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 SCUBE1Q8IWY4 988 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 SLC34A3Q8N130 599 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 CPSF7Q8N684 471 aaKnown RBP9.54□□□□□ -0.88
LDLR-214ENST00000560628 APCDD1LQ8NCL9 501 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 B3GNT7Q8NFL0 401 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 STAG3L4Q8TBR4 150 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 ADAMTS18Q8TE60 1221 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 NCLNQ969V3 563 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 MARVELD3Q96A59 401 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 TMEM125Q96AQ2 219 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 NXNL1Q96CM4 212 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 PTCD3Q96EY7 689 aaKnown RBP9.54□□□□□ -0.88
LDLR-214ENST00000560628 MAGED4Q96JG8 741 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 SERINC2Q96SA4 455 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 CSF3RQ99062 836 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 CD244Q9BZW8 370 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 PITHD1Q9GZP4 211 aaPredicted RBP9.54□□□□□ -0.88
LDLR-214ENST00000560628 EHD1Q9H4M9 534 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 COPS7BQ9H9Q2 264 aaPredicted RBP9.54□□□□□ -0.88
LDLR-214ENST00000560628 PRDM7Q9NQW5 492 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 ZNF223Q9UK11 482 aaPredicted RBP9.54□□□□□ -0.88
LDLR-214ENST00000560628 ENTPD4Q9Y227 616 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 CLDN16Q9Y5I7 305 aa9.54□□□□□ -0.88
LDLR-214ENST00000560628 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.54□□□□□ -0.88
LDLR-214ENST00000560628 A0A088AWK7 358 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 SUPT3HB4E1H0 165 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 UBXN8O00124 270 aa9.53□□□□□ -0.88
LDLR-214ENST00000560628 SAP18O00422 153 aaKnown RBP9.53□□□□□ -0.88
LDLR-214ENST00000560628 RTCAO00442 366 aaKnown RBP9.53□□□□□ -0.88
LDLR-214ENST00000560628 PRKNO60260 465 aaPredicted RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms