RNA–Protein interactions for RNA: ENST00000560175.5

SMAD3-213, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-213ENST00000560175 SIX3O95343 332 aaPredicted RBP12.4□□□□□ -0.42
SMAD3-213ENST00000560175 ZNF10P21506 573 aaPredicted RBP12.4□□□□□ -0.42
SMAD3-213ENST00000560175 TSFMP43897 325 aaKnown RBP12.4□□□□□ -0.42
SMAD3-213ENST00000560175 MTTPP55157 894 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 LIM2P55344 173 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 HSD17B7P56937 341 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 RAB38P57729 211 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 RASA2Q15283 850 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 SFT2D3Q587I9 215 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 PAPD4Q6PIY7 484 aaKnown RBP12.4□□□□□ -0.42
SMAD3-213ENST00000560175 ZNF793Q6ZN11 406 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 CHSY3Q70JA7 882 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 GOLGA7Q7Z5G4 137 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 ZNF595Q8IYB9 648 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 IQCKQ8N0W5 287 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 DNAJB14Q8TBM8 379 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 WDR20Q8TBZ3 569 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 ACMSDQ8TDX5 336 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 ADAMTS18Q8TE60 1221 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 SNRNP40Q96DI7 357 aaKnown RBP12.4□□□□□ -0.42
SMAD3-213ENST00000560175 CMTM7Q96FZ5 175 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 FAR2Q96K12 515 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 PTCHD1Q96NR3 888 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 KCNC2Q96PR1 638 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 LPAR4Q99677 370 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 ROGDIQ9GZN7 287 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 MRPL46Q9H2W6 279 aaKnown RBP12.4□□□□□ -0.42
SMAD3-213ENST00000560175 IPPKQ9H8X2 491 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 LYRM4Q9HD34 91 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 NECTIN3Q9NQS3 549 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 XPR1Q9UBH6 696 aa12.4□□□□□ -0.42
SMAD3-213ENST00000560175 SYNDIG1LA6NDD5 238 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 FOXE1O00358 373 aaPredicted RBP12.39□□□□□ -0.43
SMAD3-213ENST00000560175 OR7A17O14581 309 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 B3GALT2O43825 422 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 ZNF500O60304 480 aaPredicted RBP12.39□□□□□ -0.43
SMAD3-213ENST00000560175 B4GALT2O60909 372 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 ATP5A1P25705 553 aaKnown RBP12.39□□□□□ -0.43
SMAD3-213ENST00000560175 TNFSF10P50591 281 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 GPR143P51810 404 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 PLA2G16P53816 162 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 OR4D2P58180 307 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 SLC26A5P58743 744 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 TGM3Q08188 693 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 TLR1Q15399 786 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 TERF2Q15554 542 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 BTBD16Q32M84 506 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 MFSD4BQ5TF39 518 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 KHDRBS2Q5VWX1 349 aaKnown RBP12.39□□□□□ -0.43
SMAD3-213ENST00000560175 TDRPQ86YL5 185 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 PTGR2Q8N8N7 351 aaPredicted RBP12.39□□□□□ -0.43
SMAD3-213ENST00000560175 ACOT4Q8N9L9 421 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 TMEM52Q8NDY8 209 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 HUS1BQ8NHY5 278 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 CCT6BQ92526 530 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 NPAS2Q99743 824 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 ZNF717Q9BY31 904 aaPredicted RBP12.39□□□□□ -0.43
SMAD3-213ENST00000560175 RBCK1Q9BYM8 510 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 ANKZF1Q9H8Y5 726 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 PTGFRNQ9P2B2 879 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 CPSF2Q9P2I0 782 aaKnown RBP12.39□□□□□ -0.43
SMAD3-213ENST00000560175 PCTPQ9UKL6 214 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 USP9XQ93008 2570 aaPredicted RBP12.39□□□□□ -0.43
SMAD3-213ENST00000560175 HIVEP3Q5T1R4 2406 aa12.39□□□□□ -0.43
SMAD3-213ENST00000560175 FLNBO75369 2602 aaKnown RBP12.39□□□□□ -0.43
SMAD3-213ENST00000560175 COL12A1Q99715 3063 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 A0A0G2JN53 185 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 IQANK1A0A1B0GTG1 560 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 TGFBR3LH3BV60 316 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 PSMD12O00232 456 aaPredicted RBP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 CTNSO60931 367 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 CLDN9O95484 217 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 TGFB1P01137 390 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 RPS17P08708 135 aaKnown RBP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 MAOAP21397 527 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 HIST1H1TP22492 207 aaPredicted RBP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 PTX3P26022 381 aaPredicted RBP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 EEF1DP29692 281 aaKnown RBP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 HNRNPFP52597 415 aaKnown RBP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 SRSF1Q07955 248 aaKnown RBP eCLIP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 CUL3Q13618 768 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 ZNF169Q14929 603 aaPredicted RBP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 GGTA1PQ4G0N0 100 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 PRR30Q53SZ7 412 aaPredicted RBP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 C10orf62Q5T681 223 aaPredicted RBP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 LINC00696Q6ZRV3 163 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 LGI4Q8N135 537 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 ZCCHC7Q8N3Z6 543 aaKnown RBP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 SIRT6Q8N6T7 355 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 CATSPER1Q8NEC5 780 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 MYRIPQ8NFW9 859 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 OR52B6Q8NGF0 335 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 PHF21BQ96EK2 531 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 ZNF354BQ96LW1 612 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 NOL11Q9H8H0 719 aaKnown RBP12.38□□□□□ -0.43
SMAD3-213ENST00000560175 ACTR8Q9H981 624 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 PPCSQ9HAB8 311 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 DMRT3Q9NQL9 472 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 STMN3Q9NZ72 180 aa12.38□□□□□ -0.43
SMAD3-213ENST00000560175 TMEM216Q9P0N5 145 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms