RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 NBASA2RRP1 2371 aa8.83□□□□□ -1
LDLR-211ENST00000560173 UNC79Q9P2D8 2635 aa8.83□□□□□ -1
LDLR-211ENST00000560173 PRRC2CQ9Y520 2896 aaKnown RBP8.82□□□□□ -1
LDLR-211ENST00000560173 A0A088AWK7 358 aa8.82□□□□□ -1
LDLR-211ENST00000560173 OR2W5A6NFC9 320 aa8.82□□□□□ -1
LDLR-211ENST00000560173 MASP2O00187 686 aa8.82□□□□□ -1
LDLR-211ENST00000560173 PPP6CO00743 305 aa8.82□□□□□ -1
LDLR-211ENST00000560173 B3GALT2O43825 422 aa8.82□□□□□ -1
LDLR-211ENST00000560173 SCELO95171 688 aa8.82□□□□□ -1
LDLR-211ENST00000560173 WISP1O95388 367 aa8.82□□□□□ -1
LDLR-211ENST00000560173 OTCP00480 354 aa8.82□□□□□ -1
LDLR-211ENST00000560173 HPP00738 406 aa8.82□□□□□ -1
LDLR-211ENST00000560173 TGFB1P01137 390 aa8.82□□□□□ -1
LDLR-211ENST00000560173 C8orf89P0DMQ9 161 aa8.82□□□□□ -1
LDLR-211ENST00000560173 MYL2P10916 166 aa8.82□□□□□ -1
LDLR-211ENST00000560173 RNH1P13489 461 aaKnown RBP8.82□□□□□ -1
LDLR-211ENST00000560173 TSPAN8P19075 237 aa8.82□□□□□ -1
LDLR-211ENST00000560173 IMPDH1P20839 514 aa8.82□□□□□ -1
LDLR-211ENST00000560173 ZNF10P21506 573 aaPredicted RBP8.82□□□□□ -1
LDLR-211ENST00000560173 CERS1P27544 350 aa8.82□□□□□ -1
LDLR-211ENST00000560173 ARL1P40616 181 aaPredicted RBP8.82□□□□□ -1
LDLR-211ENST00000560173 MDH1P40925 334 aaKnown RBP8.82□□□□□ -1
LDLR-211ENST00000560173 CCL11P51671 97 aa8.82□□□□□ -1
LDLR-211ENST00000560173 SOX8P57073 446 aa8.82□□□□□ -1
LDLR-211ENST00000560173 RHAGQ02094 409 aa8.82□□□□□ -1
LDLR-211ENST00000560173 CLCQ05315 142 aa8.82□□□□□ -1
LDLR-211ENST00000560173 EEF1A2Q05639 463 aaKnown RBP8.82□□□□□ -1
LDLR-211ENST00000560173 TGM3Q08188 693 aa8.82□□□□□ -1
LDLR-211ENST00000560173 RUNX2Q13950 521 aa8.82□□□□□ -1
LDLR-211ENST00000560173 PCOLCEQ15113 449 aa8.82□□□□□ -1
LDLR-211ENST00000560173 CCDC153Q494R4 210 aa8.82□□□□□ -1
LDLR-211ENST00000560173 LACTB2Q53H82 288 aaPredicted RBP8.82□□□□□ -1
LDLR-211ENST00000560173 DEPDC1Q5TB30 811 aa8.82□□□□□ -1
LDLR-211ENST00000560173 MFSD4BQ5TF39 518 aa8.82□□□□□ -1
LDLR-211ENST00000560173 KHDRBS2Q5VWX1 349 aaKnown RBP8.82□□□□□ -1
LDLR-211ENST00000560173 FRG2Q64ET8 278 aa8.82□□□□□ -1
LDLR-211ENST00000560173 FAAH2Q6GMR7 532 aa8.82□□□□□ -1
LDLR-211ENST00000560173 TCTN3Q6NUS6 607 aa8.82□□□□□ -1
LDLR-211ENST00000560173 LETMD1Q6P1Q0 360 aa8.82□□□□□ -1
LDLR-211ENST00000560173 ZNF793Q6ZN11 406 aa8.82□□□□□ -1
LDLR-211ENST00000560173 SRRM1Q8IYB3 904 aaKnown RBP8.82□□□□□ -1
LDLR-211ENST00000560173 GALNT16Q8N428 558 aa8.82□□□□□ -1
LDLR-211ENST00000560173 RNF175Q8N4F7 328 aa8.82□□□□□ -1
LDLR-211ENST00000560173 BANPQ8N9N5 519 aa8.82□□□□□ -1
LDLR-211ENST00000560173 CLEC1AQ8NC01 280 aa8.82□□□□□ -1
LDLR-211ENST00000560173 SRFBP1Q8NEF9 429 aaKnown RBP8.82□□□□□ -1
LDLR-211ENST00000560173 OR4F6Q8NGB9 312 aa8.82□□□□□ -1
LDLR-211ENST00000560173 RDH11Q8TC12 318 aa8.82□□□□□ -1
LDLR-211ENST00000560173 TRPC4APQ8TEL6 797 aa8.82□□□□□ -1
LDLR-211ENST00000560173 L3HYPDHQ96EM0 354 aa8.82□□□□□ -1
LDLR-211ENST00000560173 APOPT1Q96IL0 206 aa8.82□□□□□ -1
LDLR-211ENST00000560173 VPS50Q96JG6 964 aa8.82□□□□□ -1
LDLR-211ENST00000560173 FAR2Q96K12 515 aa8.82□□□□□ -1
LDLR-211ENST00000560173 KCNC2Q96PR1 638 aa8.82□□□□□ -1
LDLR-211ENST00000560173 FRG2BQ96QU4 278 aa8.82□□□□□ -1
LDLR-211ENST00000560173 ZNF382Q96SR6 550 aa8.82□□□□□ -1
LDLR-211ENST00000560173 MTERF1Q99551 399 aaKnown RBP8.82□□□□□ -1
LDLR-211ENST00000560173 NPLQ9BXD5 320 aaPredicted RBP8.82□□□□□ -1
LDLR-211ENST00000560173 SLC25A18Q9H1K4 315 aa8.82□□□□□ -1
LDLR-211ENST00000560173 OR51B5Q9H339 312 aa8.82□□□□□ -1
LDLR-211ENST00000560173 C12orf65Q9H3J6 166 aaKnown RBP8.82□□□□□ -1
LDLR-211ENST00000560173 MLXIPLQ9NP71 852 aa8.82□□□□□ -1
LDLR-211ENST00000560173 PRDM7Q9NQW5 492 aa8.82□□□□□ -1
LDLR-211ENST00000560173 ZNF225Q9UK10 706 aa8.82□□□□□ -1
LDLR-211ENST00000560173 PPT2Q9UMR5 302 aa8.82□□□□□ -1
LDLR-211ENST00000560173 TP53TG5Q9Y2B4 290 aa8.82□□□□□ -1
LDLR-211ENST00000560173 PCDHGA9Q9Y5G4 932 aaKnown RBP8.82□□□□□ -1
LDLR-211ENST00000560173 NUP210LQ5VU65 1888 aa8.82□□□□□ -1
LDLR-211ENST00000560173 TEX15Q9BXT5 2789 aa8.82□□□□□ -1
LDLR-211ENST00000560173 RP1L1Q8IWN7 2480 aaPredicted RBP8.81□□□□□ -1
LDLR-211ENST00000560173 IGHV1-45A0A0A0MS14 117 aa8.81□□□□□ -1
LDLR-211ENST00000560173 A6NL46 340 aa8.81□□□□□ -1
LDLR-211ENST00000560173 MAGEB17A8MXT2 336 aa8.81□□□□□ -1
LDLR-211ENST00000560173 B8ZZF3 427 aa8.81□□□□□ -1
LDLR-211ENST00000560173 K7EM74 188 aa8.81□□□□□ -1
LDLR-211ENST00000560173 PSMD12O00232 456 aaPredicted RBP8.81□□□□□ -1
LDLR-211ENST00000560173 FOXE1O00358 373 aaPredicted RBP8.81□□□□□ -1
LDLR-211ENST00000560173 SAP18O00422 153 aaKnown RBP8.81□□□□□ -1
LDLR-211ENST00000560173 RTCAO00442 366 aaKnown RBP8.81□□□□□ -1
LDLR-211ENST00000560173 B4GALT2O60909 372 aa8.81□□□□□ -1
LDLR-211ENST00000560173 SH3BGRLO75368 114 aa8.81□□□□□ -1
LDLR-211ENST00000560173 CDC123O75794 336 aaPredicted RBP8.81□□□□□ -1
LDLR-211ENST00000560173 SUPT7LO94864 414 aa8.81□□□□□ -1
LDLR-211ENST00000560173 ETHE1O95571 254 aa8.81□□□□□ -1
LDLR-211ENST00000560173 PDGFAP04085 211 aa8.81□□□□□ -1
LDLR-211ENST00000560173 JAK1P23458 1154 aa8.81□□□□□ -1
LDLR-211ENST00000560173 ATP5A1P25705 553 aaKnown RBP8.81□□□□□ -1
LDLR-211ENST00000560173 PTX3P26022 381 aaPredicted RBP8.81□□□□□ -1
LDLR-211ENST00000560173 NEK2P51955 445 aa8.81□□□□□ -1
LDLR-211ENST00000560173 PGDP52209 483 aa8.81□□□□□ -1
LDLR-211ENST00000560173 SLC18A1P54219 525 aa8.81□□□□□ -1
LDLR-211ENST00000560173 MTTPP55157 894 aa8.81□□□□□ -1
LDLR-211ENST00000560173 RAB38P57729 211 aa8.81□□□□□ -1
LDLR-211ENST00000560173 DNAJB13P59910 316 aa8.81□□□□□ -1
LDLR-211ENST00000560173 RPS13P62277 151 aaKnown RBP8.81□□□□□ -1
LDLR-211ENST00000560173 PHEXP78562 749 aa8.81□□□□□ -1
LDLR-211ENST00000560173 Q0VFX4 171 aa8.81□□□□□ -1
LDLR-211ENST00000560173 LCP2Q13094 533 aa8.81□□□□□ -1
LDLR-211ENST00000560173 AIMP2Q13155 320 aaKnown RBP8.81□□□□□ -1
LDLR-211ENST00000560173 MYBPC3Q14896 1274 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms