RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SPRY4Q9C004 299 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 CCDC86Q9H6F5 360 aaKnown RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 MEAF6Q9HAF1 191 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 TNFRSF12AQ9NP84 129 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 PRDM7Q9NQW5 492 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 C14orf105Q9NVL8 296 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 FAM53CQ9NYF3 392 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 FOXJ2Q9P0K8 574 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 ZNF282Q9UDV7 671 aaPredicted RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 MCM8Q9UJA3 840 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 KCND3Q9UK17 655 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 EIF3LQ9Y262 564 aaKnown RBP8.75□□□□□ -1.01
LDLR-210ENST00000559340 USH1CQ9Y6N9 552 aa8.75□□□□□ -1.01
LDLR-210ENST00000559340 CHD6Q8TD26 2715 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 GNG14A0A1W2PPG7 69 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 SRRM3A6NNA2 597 aaPredicted RBP8.74□□□□□ -1.01
LDLR-210ENST00000559340 TMEM233B4DJY2 109 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 SGK494L7N484 410 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 SAP18O00422 153 aaKnown RBP8.74□□□□□ -1.01
LDLR-210ENST00000559340 PLPP1O14494 284 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 PCDH17O14917 1159 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 POLR3GO15318 223 aaPredicted RBP8.74□□□□□ -1.01
LDLR-210ENST00000559340 CHST10O43529 356 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 KLK1P06870 262 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 CTSBP07858 339 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 CYC1P08574 325 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 PRPS2P11908 318 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 ACPPP15309 386 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 ZNF28P17035 718 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 LBPP18428 481 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 TCN2P20062 427 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 SPINK2P20155 84 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 JAK1P23458 1154 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 PPP2R1BP30154 601 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 BSGP35613 385 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 BUD31P41223 144 aaPredicted RBP8.74□□□□□ -1.01
LDLR-210ENST00000559340 ASMTP46597 345 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 OR1D4P47884 311 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 MAPK12P53778 367 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 RAB38P57729 211 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 IRX1P78414 480 aaPredicted RBP8.74□□□□□ -1.01
LDLR-210ENST00000559340 HMGCS1Q01581 520 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 SLAMF1Q13291 335 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 XKR7Q5GH72 579 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 CES4AQ5XG92 561 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 ADNP2Q6IQ32 1131 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 GALNT18Q6P9A2 607 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 Q6ZSR9 355 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 SPATA19Q7Z5L4 167 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 GPR180Q86V85 440 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 ZFAND4Q86XD8 727 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 RNF175Q8N4F7 328 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 C1orf52Q8N6N3 182 aaKnown RBP8.74□□□□□ -1.01
LDLR-210ENST00000559340 ZNF248Q8NDW4 579 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 OR51Q1Q8NH59 317 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 CEP70Q8NHQ1 597 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 STON2Q8WXE9 905 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 ZCCHC14Q8WYQ9 949 aaKnown RBP8.74□□□□□ -1.01
LDLR-210ENST00000559340 MIEF2Q96C03 454 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 CHMP6Q96FZ7 201 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 HBEGFQ99075 208 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 MRPL1Q9BYD6 325 aaKnown RBP8.74□□□□□ -1.01
LDLR-210ENST00000559340 NUF2Q9BZD4 464 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 DPH1Q9BZG8 443 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 CHST8Q9H2A9 424 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 SLC26A1Q9H2B4 701 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 TUBB1Q9H4B7 451 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 WDR54Q9H977 334 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 SYNPO2LQ9H987 977 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 SLCO1B3Q9NPD5 702 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 MRGBPQ9NV56 204 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 TRPC4Q9UBN4 977 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 MARCOQ9UEW3 520 aaPredicted RBP8.74□□□□□ -1.01
LDLR-210ENST00000559340 PSME2Q9UL46 239 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 FARSAQ9Y285 508 aaKnown RBP8.74□□□□□ -1.01
LDLR-210ENST00000559340 MAU2Q9Y6X3 613 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 CEP295Q9C0D2 2601 aa8.74□□□□□ -1.01
LDLR-210ENST00000559340 A0A0A6YYD5 115 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 A0A0G2JN53 185 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 PMS2P1A4D2B8 440 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 GMNCA6NCL1 334 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 RRP8O43159 456 aaKnown RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 PCDH7O60245 1069 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 PEX11AO75192 247 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 RDH16O75452 317 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 ETHE1O95571 254 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 TBX6O95947 436 aaPredicted RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 ANXA4P09525 319 aaPredicted RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 FAM58BPP0C7Q3 252 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 DRD2P14416 443 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 CPN2P22792 545 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 CERS1P27544 350 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 TIA1P31483 386 aaKnown RBP eCLIP8.73□□□□□ -1.01
LDLR-210ENST00000559340 RPL3P39023 403 aaKnown RBP8.73□□□□□ -1.01
LDLR-210ENST00000559340 STAT5AP42229 794 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 ERVK-8P63133 956 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 GNGT1P63211 74 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 MC1RQ01726 317 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 EMX2Q04743 252 aa8.73□□□□□ -1.01
LDLR-210ENST00000559340 TBL3Q12788 808 aaKnown RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms