RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 FAM221BA6H8Z2 402 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 OR5K4A6NMS3 321 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 CLOCKO15516 846 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 NARSO43776 548 aaKnown RBP12.09□□□□□ -0.47
SHMT2-229ENST00000557348 SCN2BO60939 215 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 ASGR2P07307 311 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 GPX2P18283 190 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 AHRP35869 848 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 TSFMP43897 325 aaKnown RBP12.09□□□□□ -0.47
SHMT2-229ENST00000557348 SRP54P61011 504 aaKnown RBP12.09□□□□□ -0.47
SHMT2-229ENST00000557348 CHRNB3Q05901 458 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 HKDC1Q2TB90 917 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 LEXMQ3ZCV2 418 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 FAM71E1Q6IPT2 247 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 DNAJC14Q6Y2X3 702 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-229ENST00000557348 GCNT7Q6ZNI0 430 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 ARMCX6Q7L4S7 300 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 RNF175Q8N4F7 328 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 LINC01555Q8NAE3 123 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 OR7A2PQ8NGA2 310 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 OR2A1Q8NGT9 310 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 GOT1L1Q8NHS2 421 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-229ENST00000557348 C16orf78Q8WTQ4 265 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 RGMAQ96B86 450 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 SLC29A1Q99808 456 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 MYOCQ99972 504 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 OR51B5Q9H339 312 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 SMPD3Q9NY59 655 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-229ENST00000557348 SNX7Q9UNH6 387 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 F5P12259 2224 aa12.09□□□□□ -0.47
SHMT2-229ENST00000557348 ISPDA4D126 451 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 SHISA7A6NL88 538 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 GABRR3A8MPY1 467 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 CLIC1O00299 241 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 CXCR6O00574 342 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 CAPN5O15484 640 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-229ENST00000557348 GUCY1B2O75343 617 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 DEAF1O75398 565 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-229ENST00000557348 LDLRP01130 860 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 TNFP01375 233 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 ABCB1P08183 1280 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-229ENST00000557348 CHRNB1P11230 501 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 F3P13726 295 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 CCT8P50990 548 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 BLKP51451 505 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 WNT3P56703 355 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 CLDN2P57739 230 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 CSNK1G2P78368 415 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 SELPLGQ14242 412 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 HEPACAMQ14CZ8 416 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 THOC7Q6I9Y2 204 aaKnown RBP12.08□□□□□ -0.48
SHMT2-229ENST00000557348 HMBOX1Q6NT76 420 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 LACC1Q8IV20 430 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 TSTD1Q8NFU3 115 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 FAM162AQ96A26 154 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 BIRC7Q96CA5 298 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 PDXPQ96GD0 296 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 CIB1Q99828 191 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 GSDMCQ9BYG8 508 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 POLR1BQ9H9Y6 1135 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 MIEF1Q9NQG6 463 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 PRDM8Q9NQV8 689 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 ANKMY1Q9P2S6 941 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 SAMD4AQ9UPU9 718 aaKnown RBP12.08□□□□□ -0.48
SHMT2-229ENST00000557348 ICKQ9UPZ9 632 aa12.08□□□□□ -0.48
SHMT2-229ENST00000557348 RNF103-CHMP3A0A140T963 221 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 H7BY64 318 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 OR1F1O43749 312 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 MRPS14O60783 128 aaKnown RBP12.07□□□□□ -0.48
SHMT2-229ENST00000557348 ABCB7O75027 752 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 TIPRLO75663 272 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 RASGRP1O95267 797 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 HPRP00739 348 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 FURINP09958 794 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 LAMP1P11279 417 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 CD6P30203 668 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 ACTR1BP42025 376 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 SERPINB10P48595 397 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 ACTR1AP61163 376 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 PLIN5Q00G26 463 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 MEF2AQ02078 507 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-229ENST00000557348 TGM3Q08188 693 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 VEZF1Q14119 521 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 KIR2DS3Q14952 304 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 CPZQ66K79 652 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 ZNF621Q6ZSS3 439 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 VN1R5Q7Z5H4 357 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 ANKRD46Q86W74 232 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 AMIGO1Q86WK6 493 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 GJD3Q8N144 294 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 LMNTD1Q8N9Z9 388 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 AVL9Q8NBF6 648 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 LCN9Q8WX39 176 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 FIG4Q92562 907 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 NCLNQ969V3 563 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 RNF145Q96MT1 663 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 PRAP1Q96NZ9 151 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 CDX2Q99626 313 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-229ENST00000557348 CTRCQ99895 268 aa12.07□□□□□ -0.48
SHMT2-229ENST00000557348 INPP5KQ9BT40 448 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms