RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 VAC14Q08AM6 782 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 RBBP4Q09028 425 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 GK3PQ14409 553 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 LARP7Q4G0J3 582 aaKnown RBP eCLIP25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 PRRT3Q5FWE3 981 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 TMEM214Q6NUQ4 689 aaKnown RBP25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 IYDQ6PHW0 289 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 FAM174AQ8TBP5 190 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 TEFMQ96QE5 360 aaKnown RBP25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 GPATCH2Q9NW75 528 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 FAF1Q9UNN5 650 aaPredicted RBP25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 PLXND1Q9Y4D7 1925 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 BTN3A3O00478 584 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 TNFRSF21O75509 655 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 HPRP00739 348 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 DRD2P14416 443 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 FRKP42685 505 aaPredicted RBP25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 HYAL2Q12891 473 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 TCEA2Q15560 299 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 SLC36A3Q495N2 470 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 GCNT6Q5T4J0 391 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 TRIM40Q6P9F5 258 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 PAQR7Q86WK9 346 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 SRFBP1Q8NEF9 429 aaKnown RBP25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 TBC1D20Q96BZ9 403 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 MS4A6EQ96DS6 147 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 GPR174Q9BXC1 333 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 GSDMCQ9BYG8 508 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 CD320Q9NPF0 282 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 TAS2R7Q9NYW3 318 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 UTS2RQ9UKP6 389 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 CA14Q9ULX7 337 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 PDPK1O15530 556 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 ZNF217O75362 1048 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 ZNF682O95780 498 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 SEMG1P04279 462 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 NUDT7P0C024 238 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 CHI3L1P36222 383 aaPredicted RBP25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 CRATP43155 626 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 ALDH3A2P51648 485 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 DAG1Q14118 895 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 C16orf72Q14CZ0 275 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 TBPL2Q6SJ96 375 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 ZDHHC13Q8IUH4 622 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 MAGEE2Q8TD90 523 aaPredicted RBP25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 SDCCAG3Q96C92 435 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 TMEM38AQ9H6F2 299 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 EPS8L2Q9H6S3 715 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 MRPS17Q9Y2R5 130 aaKnown RBP25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 PCDHGB5Q9Y5G0 923 aa25.06■■□□□ 1.6
CCDC88C-205ENST00000553403 GNGT2O14610 69 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 ALDH9A1P49189 494 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 PLA2G16P53816 162 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 ARSFP54793 590 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 EIF2B5Q13144 721 aaKnown RBP25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 BIRC2Q13490 618 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 ZDHHC21Q8IVQ6 265 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 TRIM48Q8IWZ4 208 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 OR5K1Q8NHB7 308 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 C17orf62Q9BQA9 187 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 FAIM2Q9BWQ8 316 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 NLNQ9BYT8 704 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 KLHL31Q9H511 634 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 IL1RAPQ9NPH3 570 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 EHD3Q9NZN3 535 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 NCOR1O75376 2440 aa25.05■■□□□ 1.6
CCDC88C-205ENST00000553403 TRBV23OR9-2A0A075B6M9 112 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 SPTY2D1-AS1A0A0U1RR47 76 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 A0A1W2PPC4 97 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 G3V2T6 193 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 MYF6P23409 242 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 TSFMP43897 325 aaKnown RBP25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 PCBP4P57723 403 aaKnown RBP25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 RPS15AP62244 130 aaKnown RBP25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 TOR1AIP1Q5JTV8 583 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 COX20Q5RI15 118 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 ABHD17CQ6PCB6 329 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 ZNF793Q6ZN11 406 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 GJD3Q8N144 294 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 DHRSXQ8N5I4 330 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 OR2L5Q8NG80 312 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 FLVCR1-AS1Q8TAF5 88 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 KCNC2Q96PR1 638 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 NEUROD4Q9HD90 331 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 C1GALT1Q9NS00 363 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 PNPLA3Q9NST1 481 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 POT1Q9NUX5 634 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 USE1Q9NZ43 259 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 NUP214P35658 2090 aaPredicted RBP25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 OR5K4A6NMS3 321 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 ZW10O43264 779 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 GUCY1B2O75343 617 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 THEGLP0DJG4 465 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 ETFAP13804 333 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 SOAT1P35610 550 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 CAPGP40121 348 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 STXBP1P61764 594 aaKnown RBP25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 ELOAQ14241 798 aaKnown RBP25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 MLC1Q15049 377 aa25.04■■□□□ 1.6
CCDC88C-205ENST00000553403 MRM1Q6IN84 353 aaKnown RBP25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms