RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 PIANPQ8IYJ0 282 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ZNF567Q8N184 647 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 KRT222Q8N1A0 295 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 LIX1Q8N485 282 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 FAM109AQ8N4B1 249 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 PLD5Q8N7P1 536 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 FBXO15Q8NCQ5 510 aaPredicted RBP4.41□□□□□ -1.7
LIMS1-214ENST00000542845 TFB1MQ8WVM0 346 aaKnown RBP4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ASB15Q8WXK1 588 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 SMPDL3BQ92485 455 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 RAPGEF5Q92565 580 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ISL2Q96A47 359 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 RAD51AP1Q96B01 352 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ZC3HAV1LQ96H79 300 aaKnown RBP4.41□□□□□ -1.7
LIMS1-214ENST00000542845 CCDC138Q96M89 665 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 PTCHD1Q96NR3 888 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 DACH2Q96NX9 599 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ALS2CR12Q96Q35 445 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 TRIB1Q96RU8 372 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 C12orf65Q9H3J6 166 aaKnown RBP4.41□□□□□ -1.7
LIMS1-214ENST00000542845 TRIM45Q9H8W5 580 aaPredicted RBP4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ZDHHC11Q9H8X9 412 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ANKHQ9HCJ1 492 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 SEMA4BQ9NPR2 832 aaPredicted RBP4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ENAMQ9NRM1 1142 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 KLHL28Q9NXS3 571 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 SPRR3Q9UBC9 169 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ZNF629Q9UEG4 869 aaPredicted RBP4.41□□□□□ -1.7
LIMS1-214ENST00000542845 NFS1Q9Y697 457 aa4.41□□□□□ -1.7
LIMS1-214ENST00000542845 ZANQ9Y493 2812 aa4.4□□□□□ -1.7
LIMS1-214ENST00000542845 C15orf38-AP3S2A0A0A6YYH1 394 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 A0A1B0GVC2 190 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 A0A1W2PPV9 198 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 LRRC53A6NM62 1247 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 MAGEB17A8MXT2 336 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 WWP2O00308 870 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 HAT1O14929 419 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 GPRIN2O60269 458 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 ERN1O75460 977 aaKnown RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 OR2J2O76002 312 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 OR6B1O95007 311 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 KCNH1O95259 989 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 FKBP9O95302 570 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 NSA2O95478 260 aaKnown RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 C1orf105O95561 183 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 EPPINO95925 133 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 IGHG3P01860 377 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 P04436 131 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 APOA4P06727 396 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 GZMAP12544 262 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 PKMP14618 531 aaKnown RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 MAOAP21397 527 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 CTSSP25774 331 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 CFPP27918 469 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 CEACAM8P31997 349 aaPredicted RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 CPOXP36551 454 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 BCL6P41182 706 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 CLCN2P51788 898 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 GEMP55040 296 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 ADARP55265 1226 aaKnown RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 OLR1P78380 273 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 BTG2P78543 158 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 SORDQ00796 357 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 RHAGQ02094 409 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 KLHL30Q0D2K2 578 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 WASHC5Q12768 1159 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 CAPRIN1Q14444 709 aaKnown RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 DPCR1Q3MIW9 517 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 PDLIM3Q53GG5 364 aaPredicted RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 THEMIS2Q5TEJ8 643 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 HECTD2Q5U5R9 776 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 IL17RELQ6ZVW7 336 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 UBE3DQ7Z6J8 389 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 SLC22A15Q8IZD6 547 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 FBXW8Q8N3Y1 598 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 ARIH2OSQ8N7S6 290 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 NIPA2Q8N8Q9 360 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 PPFIBP2Q8ND30 876 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 BVESQ8NE79 360 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 PLPP5Q8NEB5 264 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 OR5T3Q8NGG3 340 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 SLC22A8Q8TCC7 542 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 ASZ1Q8WWH4 475 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 ROBO4Q8WZ75 1007 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 HAUS1Q96CS2 278 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 FAF2Q96CS3 445 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 JSRP1Q96MG2 331 aaPredicted RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 WFIKKN1Q96NZ8 548 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 OR2A5Q96R48 311 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 FCRL5Q96RD9 977 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 FAM173AQ9BQD7 235 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 CCDC77Q9BR77 488 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 WDR83Q9BRX9 315 aaKnown RBP4.4□□□□□ -1.71
LIMS1-214ENST00000542845 RAB11FIP5Q9BXF6 653 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 KRTAP9-9Q9BYP9 154 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 KRTAP9-4Q9BYQ2 154 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 SHARPINQ9H0F6 387 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 SLC6A15Q9H2J7 730 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 RHBGQ9H310 441 aa4.4□□□□□ -1.71
LIMS1-214ENST00000542845 C10orf88Q9H8K7 445 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms