RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 C1QTNF2Q9BXJ5 285 aa9.43□□□□□ -0.9
SS18-205ENST00000542420 WDR26Q9H7D7 661 aa9.43□□□□□ -0.9
SS18-205ENST00000542420 MIEF1Q9NQG6 463 aa9.43□□□□□ -0.9
SS18-205ENST00000542420 PDP1Q9P0J1 537 aaPredicted RBP9.43□□□□□ -0.9
SS18-205ENST00000542420 PSME2Q9UL46 239 aa9.43□□□□□ -0.9
SS18-205ENST00000542420 POFUT2Q9Y2G5 429 aa9.43□□□□□ -0.9
SS18-205ENST00000542420 GMPPBQ9Y5P6 360 aa9.43□□□□□ -0.9
SS18-205ENST00000542420 HEBP2Q9Y5Z4 205 aa9.43□□□□□ -0.9
SS18-205ENST00000542420 TRBC2A0A5B9 178 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 TMEM229AB2RXF0 380 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 CBFA2T3O75081 653 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 TGFB1P01137 390 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 PCMT1P22061 227 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 ACVR2AP27037 513 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 BSGP35613 385 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 CLK3P49761 638 aaKnown RBP9.42□□□□□ -0.9
SS18-205ENST00000542420 CLCNKAP51800 687 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 CRYBA2P53672 197 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 TAS2R38P59533 333 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 RPS21P63220 83 aaKnown RBP9.42□□□□□ -0.9
SS18-205ENST00000542420 SLC35A2P78381 396 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 CDK6Q00534 326 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 KCNC4Q03721 635 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 MESP2Q0VG99 397 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 MEP1AQ16819 746 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 ITPRIPL2Q3MIP1 535 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 CEP68Q76N32 757 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 DEPDC4Q8N2C3 294 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 PARP8Q8N3A8 854 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 TBC1D19Q8N5T2 526 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 TP53I13Q8NBR0 393 aaPredicted RBP9.42□□□□□ -0.9
SS18-205ENST00000542420 OR5AR1Q8NGP9 310 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 CDC26Q8NHZ8 85 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 WDR48Q8TAF3 677 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 GIPC3Q8TF64 312 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 RGMAQ96B86 450 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 ZNF300Q96RE9 604 aaPredicted RBP9.42□□□□□ -0.9
SS18-205ENST00000542420 NEURL2Q9BR09 285 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 ZNF717Q9BY31 904 aaPredicted RBP9.42□□□□□ -0.9
SS18-205ENST00000542420 DDX31Q9H8H2 851 aaKnown RBP9.42□□□□□ -0.9
SS18-205ENST00000542420 FANCEQ9HB96 536 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 GPATCH2Q9NW75 528 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 EBF1Q9UH73 591 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 HCN2Q9UL51 889 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 SLC17A4Q9Y2C5 497 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 MYO10Q9HD67 2058 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 A0A1W2PPV9 198 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 ZNF99A8MXY4 864 aaPredicted RBP9.42□□□□□ -0.9
SS18-205ENST00000542420 GUCY1B2O75343 617 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 GCM2O75603 506 aaPredicted RBP9.42□□□□□ -0.9
SS18-205ENST00000542420 CA3P07451 260 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 IL3P08700 152 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 PRIM2P49643 509 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 ANXA11P50995 505 aaKnown RBP9.42□□□□□ -0.9
SS18-205ENST00000542420 NPRL3Q12980 569 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 RAPSNQ13702 412 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 MAD2L1BPQ15013 274 aaPredicted RBP9.42□□□□□ -0.9
SS18-205ENST00000542420 MPEG1Q2M385 716 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.42□□□□□ -0.9
SS18-205ENST00000542420 GPR107Q5VW38 600 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 EGFLAMQ63HQ2 1017 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 TANGO2Q6ICL3 276 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 ADNP2Q6IQ32 1131 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 GET4Q7L5D6 327 aaPredicted RBP9.42□□□□□ -0.9
SS18-205ENST00000542420 PRSS48Q7RTY5 328 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 C7orf61Q8IZ16 206 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 HS3ST5Q8IZT8 346 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 PLA2G15Q8NCC3 412 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 MOAP1Q96BY2 351 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 TM4SF18Q96CE8 201 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 ITPKCQ96DU7 683 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 SIGLEC11Q96RL6 698 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 OR51B5Q9H339 312 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 NDUFAF4Q9P032 175 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 TAAR2Q9P1P5 351 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 SPASTQ9UBP0 616 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 ENPP5Q9UJA9 477 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 CDC14AQ9UNH5 594 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 LYVE1Q9Y5Y7 322 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 COL4A2P08572 1712 aa9.42□□□□□ -0.9
SS18-205ENST00000542420 CEP350Q5VT06 3117 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 IGLON5A6NGN9 336 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 MYO1GB0I1T2 1018 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 PLPP1O14494 284 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 PDPK1O15530 556 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 PLRG1O43660 514 aaKnown RBP9.41□□□□□ -0.9
SS18-205ENST00000542420 MPZL2O60487 215 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 PCCBP05166 539 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 KLK1P06870 262 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 HTR1AP08908 422 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 IL7RP16871 459 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 RHCEP18577 417 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 PKLRP30613 574 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 AHRP35869 848 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 CHI3L1P36222 383 aaPredicted RBP9.41□□□□□ -0.9
SS18-205ENST00000542420 POLR2IP36954 125 aaKnown RBP9.41□□□□□ -0.9
SS18-205ENST00000542420 CRATP43155 626 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 LIMS1P48059 325 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 RAB28P51157 221 aa9.41□□□□□ -0.9
SS18-205ENST00000542420 MAPK12P53778 367 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms