RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 Q8NFD4 153 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 OR56B2PQ8NGI1 322 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 PHF21BQ96EK2 531 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 TRAF4Q9BUZ4 470 aaPredicted RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 RANBP3Q9H6Z4 567 aaPredicted RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 TDP1Q9NUW8 608 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 PAK1IP1Q9NWT1 392 aaPredicted RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 GRHPRQ9UBQ7 328 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 IKZF3Q9UKT9 509 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 USP22Q9UPT9 525 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 WBP11Q9Y2W2 641 aaKnown RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 CSNK1G3Q9Y6M4 447 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 ISPDA4D126 451 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 FAM25AB3EWG3 89 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 FAM25CB3EWG5 89 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 FAM25GB3EWG6 89 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 GPR39O43194 453 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 CPNE3O75131 537 aaKnown RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 GPIP06744 558 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 CLUP10909 449 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 MC4RP32245 332 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 HMGCLP35914 325 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 GNG10P50151 68 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 MEOX2P50222 304 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 AKR1D1P51857 326 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 KPNA2P52292 529 aaKnown RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 SPCS3P61009 180 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 NFKB2Q00653 900 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 CD47Q08722 323 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 SELPLGQ14242 412 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 SAPCD1Q5SSQ6 148 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 NXNL2Q5VZ03 156 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 ZNF544Q6NX49 715 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 KIAA0907Q7Z7F0 614 aaPredicted RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 ZNF227Q86WZ6 799 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 HS3ST5Q8IZT8 346 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 EFHBQ8N7U6 833 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 ZNF248Q8NDW4 579 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 OR9A1PQ8NGU1 263 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 FAR1Q8WVX9 515 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 METTL21AQ8WXB1 218 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 TMBIM1Q969X1 311 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 ITCHQ96J02 903 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 NUDT16L1Q9BRJ7 211 aaKnown RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 MCOLN1Q9GZU1 580 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 TRPV4Q9HBA0 871 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 BPIFA1Q9NP55 256 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 VSX1Q9NZR4 365 aaPredicted RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 GALPQ9UBC7 116 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 OAS3Q9Y6K5 1087 aaKnown RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 NUP210Q8TEM1 1887 aaPredicted RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 ANKRD12Q6UB98 2062 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 A0A0G2JMP0 313 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 A0A0X1KG70 313 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 VSTM5A8MXK1 200 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 TFECO14948 347 aaPredicted RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 OR1I1O60431 355 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 GABARAPO95166 117 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 HTR3BO95264 441 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 FADS2O95864 444 aaKnown RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 TRBC1P01850 177 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 NTRK1P04629 796 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 CEBPBP17676 345 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 CTPS1P17812 591 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 RGS19P49795 217 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 HNMTP50135 292 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 SLC26A5P58743 744 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 IL5RAQ01344 420 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 EPS8Q12929 822 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 TRAF3Q13114 568 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 PRKG2Q13237 762 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 DAG1Q14118 895 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 OR4D1Q15615 310 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 ZNF181Q2M3W8 571 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 ARMC12Q5T9G4 340 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 CYB5R2Q6BCY4 276 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 LCN8Q6JVE9 175 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 FUNDC1Q8IVP5 155 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 LIX1Q8N485 282 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 PRR18Q8N4B5 295 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 OR2AP1Q8NGE2 309 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 CNIH3Q8TBE1 160 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 DYNC2LI1Q8TCX1 351 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 PHF10Q8WUB8 498 aaKnown RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 ISG20Q96AZ6 181 aaKnown RBP7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 ECHDC3Q96DC8 303 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 LGALS12Q96DT0 336 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 P2RY12Q9H244 342 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 LINC00597Q9H2U6 94 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 C14orf119Q9NWQ9 140 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 ERVK-18Q9QC07 812 aa7.68□□□□□ -1.18
PDLIM5-221ENST00000542407 COL4A3Q01955 1670 aa7.67□□□□□ -1.18
PDLIM5-221ENST00000542407 CDH23Q9H251 3354 aa7.67□□□□□ -1.18
PDLIM5-221ENST00000542407 CCDC154A6NI56 674 aa7.67□□□□□ -1.18
PDLIM5-221ENST00000542407 GRXCR1A8MXD5 290 aa7.67□□□□□ -1.18
PDLIM5-221ENST00000542407 C2orf74A8MZ97 194 aa7.67□□□□□ -1.18
PDLIM5-221ENST00000542407 L7N2F9 121 aa7.67□□□□□ -1.18
PDLIM5-221ENST00000542407 GNGT2O14610 69 aa7.67□□□□□ -1.18
PDLIM5-221ENST00000542407 IPO13O94829 963 aaKnown RBP7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms