RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ENGP17813 658 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 RORCP51449 518 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 AFF1P51825 1210 aaKnown RBP9.1□□□□□ -0.95
CLIP1-214ENST00000540539 RAB4BP61018 213 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 SREBF2Q12772 1141 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 ECH1Q13011 328 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 NOGQ13253 232 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 GANABQ14697 944 aaKnown RBP9.1□□□□□ -0.95
CLIP1-214ENST00000540539 AKIRIN2Q53H80 203 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 FAM171A1Q5VUB5 890 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 FAM109BQ6ICB4 259 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-214ENST00000540539 JADE1Q6IE81 842 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 C19orf48Q6RUI8 117 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 CRTC1Q6UUV9 634 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 RPS27LQ71UM5 84 aaKnown RBP9.1□□□□□ -0.95
CLIP1-214ENST00000540539 SV2AQ7L0J3 742 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 CIR1Q86X95 450 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-214ENST00000540539 FTMTQ8N4E7 242 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 ARRDC1Q8N5I2 433 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 DNAJC5GQ8N7S2 189 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 TMEM145Q8NBT3 493 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 ZDHHC1Q8WTX9 485 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 C3orf30Q96M34 536 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 RNF157Q96PX1 679 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 TCEAL7Q9BRU2 100 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 DUSP26Q9BV47 211 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 CNPPD1Q9BV87 410 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 SLAMF8Q9P0V8 285 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 GIMAP2Q9UG22 337 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 ING1Q9UK53 422 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-214ENST00000540539 POMT2Q9UKY4 750 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 BACE2Q9Y5Z0 518 aa9.1□□□□□ -0.95
CLIP1-214ENST00000540539 MYO18AQ92614 2054 aaKnown RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 C5orf52A6NGY3 159 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 F5H423 210 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 PSMD9O00233 223 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 LZTS3O60299 673 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 SIX6O95475 246 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 PRAMEF1O95521 474 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 SLC2A2P11168 524 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 GNSP15586 552 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 PTBP1P26599 531 aaKnown RBP eCLIP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 APEX1P27695 318 aaKnown RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 SUOXP51687 545 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 HTRA3P83110 453 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 SNRNP35Q16560 246 aaKnown RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 HADHQ16836 314 aaKnown RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 TIMM50Q3ZCQ8 353 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 ADGRF3Q8IZF5 1079 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 PGBD5Q8N414 524 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 OR14A16Q8NHC5 309 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 RNASE11Q8TAA1 199 aaKnown RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 KIAA1143Q96AT1 154 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 CRELD1Q96HD1 420 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 ERMAPQ96PL5 475 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 TXNRD2Q9NNW7 524 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 AMBNQ9NP70 447 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 B3GAT2Q9NPZ5 323 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 MARK1Q9P0L2 795 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 RBPJLQ9UBG7 517 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 DHCR7Q9UBM7 475 aaKnown RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 PSORS1C1Q9UIG5 152 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 CLCA2Q9UQC9 943 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 MED16Q9Y2X0 877 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 A0A1W2PQL4 384 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 METTL21EPA6NDL7 271 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 OR6C68A6NDL8 312 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 NEMP2A6NFY4 417 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 RHPN2P1A8MT19 583 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 WASH4PA8MWX3 477 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 G3V3Q6 166 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 AOC2O75106 756 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 CNMDO75829 334 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 TOXO94900 526 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 PAK4O96013 591 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 SYPP08247 313 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 HIST1H2AGP0C0S8 130 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 HIST1H2ADP20671 130 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 PIK3CGP48736 1102 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 NR0B1P51843 470 aaKnown RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 AP1S1P61966 158 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 BTG1P62324 171 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 RAB33AQ14088 237 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 GK2Q14410 553 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 LAPTM4AQ15012 233 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 USP39Q53GS9 565 aaKnown RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 COQ5Q5HYK3 327 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 PAGE3Q5JUK9 113 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 BSPRYQ5W0U4 402 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 HEATR6Q6AI08 1181 aaKnown RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 BICRALQ6AI39 1079 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 CLEC6AQ6EIG7 209 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 HIST2H2AA3Q6FI13 130 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 ALKAL2Q6UX46 152 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 RAB44Q7Z6P3 723 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-214ENST00000540539 CUZD1Q86UP6 607 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 LDLRAD3Q86YD5 345 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 FAM217AQ8IXS0 508 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 NAGSQ8N159 534 aa9.09□□□□□ -0.95
CLIP1-214ENST00000540539 MIER2Q8N344 545 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms