RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 GLOD4Q9HC38 313 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 PARD6AQ9NPB6 346 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 POLE4Q9NR33 117 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 RGS18Q9NS28 235 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 TREX1Q9NSU2 369 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 PLCXD1Q9NUJ7 323 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 TRMT13Q9NUP7 481 aaKnown RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 DNMT3BQ9UBC3 853 aaKnown RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 OPTCQ9UBM4 332 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 KLHL21Q9UJP4 597 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 RPS6KA6Q9UK32 745 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 FBXW11Q9UKB1 542 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 RUVBL1Q9Y265 456 aaKnown RBP6.34□□□□□ -1.39
USP28-202ENST00000535607 TIMM22Q9Y584 194 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 KLK4Q9Y5K2 254 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 TRPV2Q9Y5S1 764 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 RALGAPA2Q2PPJ7 1873 aa6.34□□□□□ -1.39
USP28-202ENST00000535607 TSC2P49815 1807 aa6.34□□□□□ -1.4
USP28-202ENST00000535607 MICAL3Q7RTP6 2002 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 A0A1W2PQ72 361 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 EFCAB10A6NFE3 127 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 NEMP2A6NFY4 417 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 ZSCAN5BA6NJL1 495 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 FAM220BPB1ANY3 271 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 SUPT3HB4E1H0 165 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 H3BUI4 141 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 UPK1AO00322 258 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 CXCR6O00574 342 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 MATN3O15232 486 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 MPZL2O60487 215 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 KERAO60938 352 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 WDR47O94967 919 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 GLP2RO95838 553 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 FADS2O95864 444 aaKnown RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 C1RP00736 705 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 PLATP00750 562 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 FTH1P02794 183 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 VTNP04004 478 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 LINC00032P0C843 101 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 PRR35P0CG20 571 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 DBTP11182 482 aaKnown RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 DARSP14868 501 aaKnown RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 CYP3A5P20815 502 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 WARSP23381 471 aaKnown RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 HLA-DMAP28067 261 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 ADORA2BP29275 332 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 PTGS2P35354 604 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 GNALP38405 381 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 OR3A3P47888 321 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 CLK3P49761 638 aaKnown RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 SERPINH1P50454 418 aaKnown RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 PLK1P53350 603 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 NCS1P62166 190 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 MRPL28Q13084 256 aaKnown RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 MRPL49Q13405 166 aaKnown RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 GRB7Q14451 532 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 GBX1Q14549 363 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 QPRTQ15274 297 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 RBBP7Q16576 425 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 TIGD6Q17RP2 521 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 SOWAHAQ2M3V2 549 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 CTU2Q2VPK5 515 aaKnown RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 TBRG1Q3YBR2 411 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 ESCO2Q56NI9 601 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 CACHD1Q5VU97 1274 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 MLIPQ5VWP3 458 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 CCDC149Q6ZUS6 474 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 RFPL4BQ6ZWI9 263 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 GDPD3Q7L5L3 318 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 ZNF367Q7RTV3 350 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 KDELC2Q7Z4H8 507 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 ADGRE4PQ86SQ3 457 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 ISCA2Q86U28 154 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 PIGZQ86VD9 579 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 GATAD2AQ86YP4 633 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 DENND6AQ8IWF6 608 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 TCTE3Q8IZS6 198 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 PYROXD2Q8N2H3 581 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 D2HGDHQ8N465 521 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 NKAPQ8N5F7 415 aaKnown RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 C12orf29Q8N999 325 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 TTC29Q8NA56 475 aaPredicted RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 FNDC5Q8NAU1 212 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 PSD4Q8NDX1 1056 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 ACVR1CQ8NER5 493 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 APPL2Q8NEU8 664 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 IPMKQ8NFU5 416 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 HCAR2Q8TDS4 363 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 DNAJB3Q8WWF6 145 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 HOXB13Q92826 284 aaPredicted RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 OMA1Q96E52 524 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 SLC39A13Q96H72 371 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 PIWIL1Q96J94 861 aaKnown RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 COL21A1Q96P44 957 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 KCNC2Q96PR1 638 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 IL12RB2Q99665 862 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 APOL2Q9BQE5 337 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 CPPED1Q9BRF8 314 aaPredicted RBP6.33□□□□□ -1.4
USP28-202ENST00000535607 COPS4Q9BT78 406 aa6.33□□□□□ -1.4
USP28-202ENST00000535607 AMBRA1Q9C0C7 1298 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms