RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TRIML2Q8N7C3 387 aa19.71■□□□□ 0.75
VPS28-209ENST00000528142 FAM174AQ8TBP5 190 aa19.71■□□□□ 0.75
VPS28-209ENST00000528142 KLHDC7BQ96G42 594 aa19.71■□□□□ 0.75
VPS28-209ENST00000528142 PYURFQ96I23 114 aa19.71■□□□□ 0.75
VPS28-209ENST00000528142 SLC6A18Q96N87 628 aa19.71■□□□□ 0.75
VPS28-209ENST00000528142 PRDM7Q9NQW5 492 aa19.71■□□□□ 0.75
VPS28-209ENST00000528142 POT1Q9NUX5 634 aa19.71■□□□□ 0.75
VPS28-209ENST00000528142 A0A0G2JN53 185 aa19.7■□□□□ 0.74
VPS28-209ENST00000528142 DEAF1O75398 565 aaPredicted RBP19.7■□□□□ 0.74
VPS28-209ENST00000528142 KDELR2P33947 212 aa19.7■□□□□ 0.74
VPS28-209ENST00000528142 ABHD17CQ6PCB6 329 aa19.7■□□□□ 0.74
VPS28-209ENST00000528142 TRIM48Q8IWZ4 208 aa19.7■□□□□ 0.74
VPS28-209ENST00000528142 SIX5Q8N196 739 aa19.7■□□□□ 0.74
VPS28-209ENST00000528142 OR52N2Q8NGI0 321 aa19.7■□□□□ 0.74
VPS28-209ENST00000528142 SHDQ96IW2 340 aa19.7■□□□□ 0.74
VPS28-209ENST00000528142 SLAMF7Q9NQ25 335 aa19.7■□□□□ 0.74
VPS28-209ENST00000528142 TEX10Q9NXF1 929 aaPredicted RBP19.7■□□□□ 0.74
VPS28-209ENST00000528142 CPNE7Q9UBL6 633 aa19.7■□□□□ 0.74
VPS28-209ENST00000528142 PCDHGA2Q9Y5H1 932 aa19.7■□□□□ 0.74
VPS28-209ENST00000528142 HEATR5BQ9P2D3 2071 aa19.7■□□□□ 0.74
VPS28-209ENST00000528142 TNFSF14O43557 240 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 VIPP01282 170 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 HOXB6P17509 224 aaKnown RBP19.69■□□□□ 0.74
VPS28-209ENST00000528142 FRKP42685 505 aaPredicted RBP19.69■□□□□ 0.74
VPS28-209ENST00000528142 SSR2P43308 183 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 PLCL1Q15111 1095 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 COX20Q5RI15 118 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 SFTPA2Q8IWL1 248 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 OR2L5Q8NG80 312 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 VPS50Q96JG6 964 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 TAS2R7Q9NYW3 318 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 SAMD4AQ9UPU9 718 aaKnown RBP19.69■□□□□ 0.74
VPS28-209ENST00000528142 KIR2DS5A0A0G2JLQ3 304 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 A0A0G2JNG1 304 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 RNF103-CHMP3A0A140T963 221 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 OR2A25A4D2G3 310 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 OR5K4A6NMS3 321 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 METTL12A8MUP2 240 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 KIR2DS3K7RE56 304 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 TNFRSF21O75509 655 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 UGT2B7P16662 529 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 ALDH9A1P49189 494 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 PCBP4P57723 403 aaKnown RBP19.69■□□□□ 0.74
VPS28-209ENST00000528142 KIR2DS5Q14953 304 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 TOR1AIP1Q5JTV8 583 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 FAM180BQ6P0A1 224 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 CHERPQ8IWX8 916 aaKnown RBP19.69■□□□□ 0.74
VPS28-209ENST00000528142 NELL2Q99435 816 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 EPS8L2Q9H6S3 715 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 ACTR10Q9NZ32 417 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 DNAJB9Q9UBS3 223 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 APOBEC3BQ9UH17 382 aaKnown RBP19.69■□□□□ 0.74
VPS28-209ENST00000528142 SCOCQ9UIL1 159 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 FBXL21Q9UKT6 434 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 ACSL6Q9UKU0 697 aa19.69■□□□□ 0.74
VPS28-209ENST00000528142 OR6C74A6NCV1 312 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 AXIN1O15169 862 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 ZW10O43264 779 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 ERI3O43414 337 aaKnown RBP19.68■□□□□ 0.74
VPS28-209ENST00000528142 FAM58BPP0C7Q3 252 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 HIST1H1TP22492 207 aaPredicted RBP19.68■□□□□ 0.74
VPS28-209ENST00000528142 PCGF2P35227 344 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 PXNP49023 591 aaPredicted RBP19.68■□□□□ 0.74
VPS28-209ENST00000528142 CHN2P52757 468 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 RPS15AP62244 130 aaKnown RBP19.68■□□□□ 0.74
VPS28-209ENST00000528142 GK3PQ14409 553 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 MRM1Q6IN84 353 aaKnown RBP19.68■□□□□ 0.74
VPS28-209ENST00000528142 FBXO42Q6P3S6 717 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 FKBP9P1Q75LS8 142 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 VN1R4Q7Z5H5 301 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 TAF8Q7Z7C8 310 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 TRIM73Q86UV7 250 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 PARGQ86W56 976 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 OR5P2Q8WZ92 322 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 UCN3Q969E3 161 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 KCNC2Q96PR1 638 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 CXorf36Q9H7Y0 433 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 C1GALT1Q9NS00 363 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 PCDHGB5Q9Y5G0 923 aa19.68■□□□□ 0.74
VPS28-209ENST00000528142 A6NHS1 94 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 EI24O14681 340 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 PDPK1O15530 556 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 ETFAP13804 333 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 DRD2P14416 443 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 DDX5P17844 614 aaKnown RBP19.67■□□□□ 0.74
VPS28-209ENST00000528142 POLR2CP19387 275 aaPredicted RBP19.67■□□□□ 0.74
VPS28-209ENST00000528142 UQCRC2P22695 453 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 ATP5A1P25705 553 aaKnown RBP19.67■□□□□ 0.74
VPS28-209ENST00000528142 CD27P26842 260 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 MAGEA2P43356 314 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 TXNL4AP83876 142 aaKnown RBP19.67■□□□□ 0.74
VPS28-209ENST00000528142 SLC5A12Q1EHB4 618 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 LRRC23Q53EV4 343 aaPredicted RBP19.67■□□□□ 0.74
VPS28-209ENST00000528142 TJAP1Q5JTD0 557 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 TBPL2Q6SJ96 375 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 CBLL1Q75N03 491 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 ZCCHC7Q8N3Z6 543 aaKnown RBP19.67■□□□□ 0.74
VPS28-209ENST00000528142 SLC37A2Q8TED4 501 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 TFAP2CQ92754 450 aa19.67■□□□□ 0.74
VPS28-209ENST00000528142 MAL2Q969L2 176 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms