RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 IQCMA0A1B0GVH7 501 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 NKX6-3A6NJ46 265 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 RTCAO00442 366 aaKnown RBP2.85□□□□□ -1.95
VPS50-219ENST00000495039 CTDSPLO15194 276 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 MAGEB2O15479 319 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 ST8SIA3O43173 380 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 STX6O43752 255 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 KRT3P12035 628 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 MYOGP15173 224 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 GOT1P17174 413 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 CCND3P30281 292 aaPredicted RBP2.85□□□□□ -1.95
VPS50-219ENST00000495039 KCNJ1P48048 391 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 CLCN4P51793 760 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 C11orf88Q6PI97 169 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 IGFL3Q6UXB1 125 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 C15orf52Q6ZUT6 534 aaKnown RBP2.85□□□□□ -1.95
VPS50-219ENST00000495039 TRMT11Q7Z4G4 463 aaKnown RBP2.85□□□□□ -1.95
VPS50-219ENST00000495039 C5orf24Q7Z6I8 188 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 ANKRD23Q86SG2 305 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 HOOK3Q86VS8 718 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 TUSC5Q8IXB3 177 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 ATAD1Q8NBU5 361 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 KIAA0895Q8NCT3 520 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 CNRIP1Q96F85 164 aaPredicted RBP2.85□□□□□ -1.95
VPS50-219ENST00000495039 ZNF597Q96LX8 424 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 OVOL2Q9BRP0 275 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 ATG101Q9BSB4 218 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 CHCHD5Q9BSY4 110 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 COPS7BQ9H9Q2 264 aaPredicted RBP2.85□□□□□ -1.95
VPS50-219ENST00000495039 SLCO1C1Q9NYB5 712 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 SEPT10Q9P0V9 454 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 NOCTQ9UK39 431 aaKnown RBP2.85□□□□□ -1.95
VPS50-219ENST00000495039 PLCL2Q9UPR0 1127 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 SATB2Q9UPW6 733 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 UMODL1Q5DID0 1318 aa2.85□□□□□ -1.95
VPS50-219ENST00000495039 KIAA1217Q5T5P2 1943 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 IGHV4-30-2A0A087WSY4 118 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 A0A087WWV3 80 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.84□□□□□ -1.95
VPS50-219ENST00000495039 SDR42E2A6NKP2 422 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 FAM220BPB1ANY3 271 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 TCP10L2B9ZVM9 353 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 H0Y626 953 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 PHF1O43189 567 aaPredicted RBP2.84□□□□□ -1.95
VPS50-219ENST00000495039 SCO2O43819 266 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 RAD51DO75771 328 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 KRT6AP02538 564 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 KRT6BP04259 564 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 SUPT20HL2P0C7V6 817 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 MGMTP16455 207 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 CTNNA2P26232 953 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 GIFP27352 417 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 TCF7P36402 384 aaPredicted RBP2.84□□□□□ -1.95
VPS50-219ENST00000495039 OR3A1P47881 315 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 KRT6CP48668 564 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 ZNF177Q13360 481 aaPredicted RBP2.84□□□□□ -1.95
VPS50-219ENST00000495039 GRB14Q14449 540 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 MS4A18Q3C1V0 323 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 ANKRD20A4Q4UJ75 823 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 ANKRD20A8PQ5CZ79 823 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 ARMCX4Q5H9R4 360 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 ANKRD20A2Q5SQ80 823 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 FAM182AQ5T1J6 154 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 ANKRD20A1Q5TYW2 823 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 ANKRD20A3Q5VUR7 823 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 ZNF770Q6IQ21 691 aaPredicted RBP2.84□□□□□ -1.95
VPS50-219ENST00000495039 KLHL10Q6JEL2 608 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 SLC22A15Q8IZD6 547 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 TEX26Q8N6G2 289 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 OR10G7Q8NGN6 311 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 RPLP0P6Q8NHW5 317 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 CKAP2Q8WWK9 683 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 JAKMIP1Q96N16 626 aaKnown RBP2.84□□□□□ -1.95
VPS50-219ENST00000495039 PRMT1Q99873 361 aaKnown RBP2.84□□□□□ -1.95
VPS50-219ENST00000495039 C17orf62Q9BQA9 187 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 IDI2Q9BXS1 227 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 C5orf66Q9H5L9 145 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 TMEM206Q9H813 350 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 C3orf14Q9HBI5 128 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 TUFT1Q9NNX1 390 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 NLGN3Q9NZ94 848 aa2.84□□□□□ -1.95
VPS50-219ENST00000495039 HBS1LQ9Y450 684 aaKnown RBP2.84□□□□□ -1.95
VPS50-219ENST00000495039 NEDD4P46934 1319 aa2.84□□□□□ -1.96
VPS50-219ENST00000495039 GLTPD2A6NH11 291 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 K7EQD1 137 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 HAT1O14929 419 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 ECE2O60344 883 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 ACSL4O60488 711 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 ZNF354AO60765 605 aaPredicted RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 MTRF1O75570 445 aaKnown RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 CRCPO75575 148 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 GRAP2O75791 330 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 RPLP0P05388 317 aaKnown RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 AOC1P19801 751 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 C4BPBP20851 252 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 GPR183P32249 361 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 FEN1P39748 380 aaKnown RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 SLC1A3P43003 542 aa2.83□□□□□ -1.96
VPS50-219ENST00000495039 TNNT3P45378 269 aaPredicted RBP2.83□□□□□ -1.96
VPS50-219ENST00000495039 IER3P46695 156 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms