RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 SUN3Q8TAQ9 357 aa31.14■■■□□ 2.58
CBX4-203ENST00000494546 GPR78Q96P69 363 aa31.14■■■□□ 2.58
CBX4-203ENST00000494546 SERINC2Q96SA4 455 aa31.14■■■□□ 2.58
CBX4-203ENST00000494546 NFU1Q9UMS0 254 aa31.14■■■□□ 2.58
CBX4-203ENST00000494546 MMACHCQ9Y4U1 282 aa31.14■■■□□ 2.58
CBX4-203ENST00000494546 DOPEY2Q9Y3R5 2298 aa31.14■■■□□ 2.58
CBX4-203ENST00000494546 SERPINB9P50453 376 aa31.13■■■□□ 2.57
CBX4-203ENST00000494546 ALDH18A1P54886 795 aaKnown RBP31.13■■■□□ 2.57
CBX4-203ENST00000494546 E2F2Q14209 437 aa31.13■■■□□ 2.57
CBX4-203ENST00000494546 NAA30Q147X3 362 aaPredicted RBP31.13■■■□□ 2.57
CBX4-203ENST00000494546 MEP1AQ16819 746 aa31.13■■■□□ 2.57
CBX4-203ENST00000494546 MYLK4Q86YV6 388 aaPredicted RBP31.13■■■□□ 2.57
CBX4-203ENST00000494546 SLC5A8Q8N695 610 aa31.13■■■□□ 2.57
CBX4-203ENST00000494546 FAM47BQ8NA70 645 aa31.13■■■□□ 2.57
CBX4-203ENST00000494546 ZNF473Q8WTR7 871 aaKnown RBP31.13■■■□□ 2.57
CBX4-203ENST00000494546 PRTFDC1Q9NRG1 225 aa31.13■■■□□ 2.57
CBX4-203ENST00000494546 ABI3Q9P2A4 366 aa31.13■■■□□ 2.57
CBX4-203ENST00000494546 A0A087WUV0 522 aaPredicted RBP31.12■■■□□ 2.57
CBX4-203ENST00000494546 BLACEA4D250 179 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 LRRC14BA6NHZ5 514 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 SH3BGRLO75368 114 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 ST13P50502 369 aaKnown RBP31.12■■■□□ 2.57
CBX4-203ENST00000494546 LAS2Q8IYD9 372 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 KIF2BQ8N4N8 673 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 BCORP1Q8N888 145 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 ST6GALNAC3Q8NDV1 305 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 ADAMTS18Q8TE60 1221 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 NPAS2Q99743 824 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 MS4A8Q9BY19 250 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 PRDM7Q9NQW5 492 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 ZNF358Q9NW07 568 aa31.12■■■□□ 2.57
CBX4-203ENST00000494546 HECTD1Q9ULT8 2610 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 SAGE2PA6NJ88 616 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 CLDN4O14493 209 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 KLK8O60259 260 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 MAN1A2O60476 641 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 KRT38O76015 456 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 MYBL2P10244 700 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 LIM2P55344 173 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 SLC13A2Q13183 592 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 GRHL2Q6ISB3 625 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 IFT20Q8IY31 132 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 TMEM52Q8NDY8 209 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 OR7G3Q8NG95 312 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 ELP5Q8TE02 316 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 ISL2Q96A47 359 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 KCNC2Q96PR1 638 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 COL12A1Q99715 3063 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 OLAHQ9NV23 265 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 ANKRD10Q9NXR5 420 aa31.11■■■□□ 2.57
CBX4-203ENST00000494546 MRPS33Q9Y291 106 aaKnown RBP31.11■■■□□ 2.57
CBX4-203ENST00000494546 PRAMEF2O60811 474 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 TGFB1P01137 390 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 MAGEA12P43365 314 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 HNRNPFP52597 415 aaKnown RBP31.1■■■□□ 2.57
CBX4-203ENST00000494546 PCDH1Q08174 1060 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 DDX39BQ13838 428 aaKnown RBP31.1■■■□□ 2.57
CBX4-203ENST00000494546 TECRLQ5HYJ1 363 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 UBE3DQ7Z6J8 389 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 SCUBE1Q8IWY4 988 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 SRFBP1Q8NEF9 429 aaKnown RBP31.1■■■□□ 2.57
CBX4-203ENST00000494546 DCAKDQ8WVC6 231 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 TAAR6Q96RI8 345 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 CDCP1Q9H5V8 836 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 ACTR8Q9H981 624 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 PNO1Q9NRX1 252 aaKnown RBP31.1■■■□□ 2.57
CBX4-203ENST00000494546 DAPP1Q9UN19 280 aa31.1■■■□□ 2.57
CBX4-203ENST00000494546 RTCAO00442 366 aaKnown RBP31.09■■■□□ 2.57
CBX4-203ENST00000494546 E2F3O00716 465 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 HSD17B7P56937 341 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 TUBA3CQ13748 450 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 INAQ16352 499 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 TUBA3EQ6PEY2 450 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 CHSY3Q70JA7 882 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 CLNKQ7Z7G1 428 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 SSC4DQ8WTU2 575 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 SCYL1Q96KG9 808 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 CSF3RQ99062 836 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 UTP23Q9BRU9 249 aaKnown RBP31.09■■■□□ 2.57
CBX4-203ENST00000494546 ROGDIQ9GZN7 287 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 ZNF180Q9UJW8 692 aa31.09■■■□□ 2.57
CBX4-203ENST00000494546 TRIM49D1C9J1S8 452 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 SAP18O00422 153 aaKnown RBP31.08■■■□□ 2.57
CBX4-203ENST00000494546 SIX3O95343 332 aaPredicted RBP31.08■■■□□ 2.57
CBX4-203ENST00000494546 RHOXF2BP0C7M4 288 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 EDN3P14138 238 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 CNTFP26441 200 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 SERPINB1P30740 379 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 GTF2H2Q13888 395 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 RCN2Q14257 317 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 PCBP2Q15366 365 aaKnown RBP eCLIP31.08■■■□□ 2.571e-6■■■□□ 15.4
CBX4-203ENST00000494546 TMEM35AQ53FP2 167 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 GTF2H2CQ6P1K8 395 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 ZNF595Q8IYB9 648 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 RNF175Q8N4F7 328 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 NFAM1Q8NET5 270 aaPredicted RBP31.08■■■□□ 2.57
CBX4-203ENST00000494546 CMTM7Q96FZ5 175 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 RHOXF2Q9BQY4 288 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 TBCDQ9BTW9 1192 aa31.08■■■□□ 2.57
CBX4-203ENST00000494546 OR51B5Q9H339 312 aa31.08■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms