RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 CPSF6Q16630 551 aaKnown RBP eCLIP13.43□□□□□ -0.26
BRCA1-218ENST00000489037 ABHD17BQ5VST6 288 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 PLAG1Q6DJT9 500 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 TTC19Q6DKK2 380 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-218ENST00000489037 ADNP2Q6IQ32 1131 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 PAPD4Q6PIY7 484 aaKnown RBP13.43□□□□□ -0.26
BRCA1-218ENST00000489037 SIRT6Q8N6T7 355 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 HUS1BQ8NHY5 278 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 M1APQ8TC57 530 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 CPT1CQ8TCG5 803 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 TSLPQ969D9 159 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 RGMAQ96B86 450 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 QRFPRQ96P65 431 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 AICDAQ9GZX7 198 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 KCNK13Q9HB14 408 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 PRTFDC1Q9NRG1 225 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 LUZP4Q9P127 313 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 TSC22D4Q9Y3Q8 395 aa13.43□□□□□ -0.26
BRCA1-218ENST00000489037 A8MUI8 341 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 C4orf51C9J302 202 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 FAM227AF5H4B4 570 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 H0YIV9 168 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 GOLGA8RI6L899 631 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 VPS4BO75351 444 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 SH3BGRLO75368 114 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 ITGAMP11215 1152 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 PTX3P26022 381 aaPredicted RBP13.42□□□□□ -0.26
BRCA1-218ENST00000489037 CERS1P27544 350 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 SSR2P43308 183 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 EFNA3P52797 238 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 TAS2R50P59544 299 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 BTG2P78543 158 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 SLC13A2Q13183 592 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 PLEKHN1Q494U1 663 aaPredicted RBP13.42□□□□□ -0.26
BRCA1-218ENST00000489037 DEPDC1Q5TB30 811 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 KHDRBS2Q5VWX1 349 aaKnown RBP13.42□□□□□ -0.26
BRCA1-218ENST00000489037 IGFL2Q6UWQ7 119 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 Q6ZS92 163 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 MILR1Q7Z6M3 343 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 ZNF595Q8IYB9 648 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 SHISA5Q8N114 240 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 L3MBTL4Q8NA19 623 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 C7orf57Q8NEG2 295 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 CNDP1Q96KN2 507 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 ZNF354BQ96LW1 612 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 MTERF1Q99551 399 aaKnown RBP13.42□□□□□ -0.26
BRCA1-218ENST00000489037 NTMT1Q9BV86 223 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 EPB41L4BQ9H329 900 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 CLMPQ9H6B4 373 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 ANKZF1Q9H8Y5 726 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 ZBTB20Q9HC78 741 aaPredicted RBP13.42□□□□□ -0.26
BRCA1-218ENST00000489037 LYRM4Q9HD34 91 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 PRDM7Q9NQW5 492 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 ABI3Q9P2A4 366 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 PCTPQ9UKL6 214 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 DAPP1Q9UN19 280 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 VPS4AQ9UN37 437 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 CPAMD8Q8IZJ3 1885 aa13.42□□□□□ -0.26
BRCA1-218ENST00000489037 BLACEA4D250 179 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 SMIM23A6NLE4 172 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 A8MT66 165 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 ESPNB1AK53 854 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 SORBS2O94875 1100 aaKnown RBP13.41□□□□□ -0.26
BRCA1-218ENST00000489037 OTCP00480 354 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 CELA2AP08217 269 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 PYGBP11216 843 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 MAOAP21397 527 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 HIST1H1TP22492 207 aaPredicted RBP13.41□□□□□ -0.26
BRCA1-218ENST00000489037 ATP5A1P25705 553 aaKnown RBP13.41□□□□□ -0.26
BRCA1-218ENST00000489037 TSFMP43897 325 aaKnown RBP13.41□□□□□ -0.26
BRCA1-218ENST00000489037 LIM2P55344 173 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 HSD17B7P56937 341 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 FOXK1P85037 733 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 ZNF33BQ06732 778 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 IFT88Q13099 833 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 ESPL1Q14674 2120 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 TLR1Q15399 786 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 ZRSR2Q15696 482 aaKnown RBP13.41□□□□□ -0.26
BRCA1-218ENST00000489037 INPP5JQ15735 1006 aaPredicted RBP13.41□□□□□ -0.26
BRCA1-218ENST00000489037 IGFBP7Q16270 282 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 C10orf62Q5T681 223 aaPredicted RBP13.41□□□□□ -0.26
BRCA1-218ENST00000489037 OR4C11Q6IEV9 310 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 TDRPQ86YL5 185 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 SLC22A9Q8IVM8 553 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 ACOT4Q8N9L9 421 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 FAM47BQ8NA70 645 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 SUN3Q8TAQ9 357 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 PSMF1Q92530 271 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 SLC29A3Q9BZD2 475 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 OR51B5Q9H339 312 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 MMP25Q9NPA2 562 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 SEMA4BQ9NPR2 832 aaPredicted RBP13.41□□□□□ -0.26
BRCA1-218ENST00000489037 DMRT3Q9NQL9 472 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 PSD3Q9NYI0 1048 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 STMN3Q9NZ72 180 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 TMEM216Q9P0N5 145 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 RNF11Q9Y3C5 154 aa13.41□□□□□ -0.26
BRCA1-218ENST00000489037 GCN1Q92616 2671 aaKnown RBP13.41□□□□□ -0.26
BRCA1-218ENST00000489037 TCRBV16S1A1N1A0A5B0 115 aa13.4□□□□□ -0.26
BRCA1-218ENST00000489037 FOXE1O00358 373 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms