RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	FRMD6	Q96NE9	622 aa		11.64	□□□□□ -0.55
SREBF1-215	ENST00000487401	GPR22	Q99680	433 aa		11.64	□□□□□ -0.55
SREBF1-215	ENST00000487401	RBBP8	Q99708	897 aa		11.64	□□□□□ -0.55
SREBF1-215	ENST00000487401	CCDC77	Q9BR77	488 aa		11.64	□□□□□ -0.55
SREBF1-215	ENST00000487401	TMEM79	Q9BSE2	394 aa		11.64	□□□□□ -0.55
SREBF1-215	ENST00000487401	EFCAB11	Q9BUY7	163 aa		11.64	□□□□□ -0.55
SREBF1-215	ENST00000487401	EHD1	Q9H4M9	534 aa		11.64	□□□□□ -0.55
SREBF1-215	ENST00000487401	COPS7B	Q9H9Q2	264 aa	Predicted RBP	11.64	□□□□□ -0.55
SREBF1-215	ENST00000487401	KLF2	Q9Y5W3	355 aa	Predicted RBP	11.64	□□□□□ -0.55
SREBF1-215	ENST00000487401	ICE1	Q9Y2F5	2266 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	SYNDIG1L	A6NDD5	238 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	ASNA1	O43681	348 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	NME2P1	O60361	137 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	CCNT2	O60583	730 aa	Known RBP	11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	WISP3	O95389	354 aa	Predicted RBP	11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	IFNA16	P05015	189 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	ZNF24	P17028	368 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	NME2	P22392	152 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	SMS	P52788	366 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	MTTP	P55157	894 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	RAB38	P57729	211 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	IRF8	Q02556	426 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	C2orf54	Q08AI8	447 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	BMPR2	Q13873	1038 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	DOC2A	Q14183	400 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	TERF2	Q15554	542 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	OR4D1	Q15615	310 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	SCUBE1	Q8IWY4	988 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	ZNF595	Q8IYB9	648 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	TMEM132C	Q8N3T6	1108 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	TMEM156	Q8N614	296 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	PPM1N	Q8N819	430 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	FAM47B	Q8NA70	645 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	STAG3L4	Q8TBR4	150 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	EXT2	Q93063	718 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	KIAA1191	Q96A73	305 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	ESAM	Q96AP7	390 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	PTCD3	Q96EY7	689 aa	Known RBP	11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	VMP1	Q96GC9	406 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	QRFPR	Q96P65	431 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	SERINC2	Q96SA4	455 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	ROGDI	Q9GZN7	287 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	TRIM45	Q9H8W5	580 aa	Predicted RBP	11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	GRHL1	Q9NZI5	618 aa		11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	PTBP2	Q9UKA9	531 aa	Known RBP	11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	ZNF490	Q9ULM2	529 aa	Predicted RBP	11.63	□□□□□ -0.55
SREBF1-215	ENST00000487401	POLE	Q07864	2286 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	KLRC4-KLRK1	H3BQV0	150 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	FANCG	O15287	622 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	ZFAND5	O76080	213 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	ABO	P16442	354 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	HTR1E	P28566	365 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	CRABP2	P29373	138 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	STX2	P32856	288 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	GPX6	P59796	221 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	SLMAP	Q14BN4	828 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	EFTUD2	Q15029	972 aa	Known RBP eCLIP	11.62	□□□□□ -0.55	2e-9	■■■□□ 19.1
SREBF1-215	ENST00000487401	ZKSCAN8	Q15776	578 aa	Predicted RBP	11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	ADPRM	Q3LIE5	342 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	ABHD17C	Q6PCB6	329 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	XKRX	Q6PP77	449 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	LRRC70	Q7Z2Q7	622 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	CLNK	Q7Z7G1	428 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	TBC1D1	Q86TI0	1168 aa	Predicted RBP	11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	TICAM1	Q8IUC6	712 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	SIAH3	Q8IW03	269 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	SRRM1	Q8IYB3	904 aa	Known RBP	11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	GHDC	Q8N2G8	530 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	POGLUT1	Q8NBL1	392 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	PDPR	Q8NCN5	879 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	SRFBP1	Q8NEF9	429 aa	Known RBP	11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	UBE2E3	Q969T4	207 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	NCLN	Q969V3	563 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	WDR34	Q96EX3	536 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	UBXN10	Q96LJ8	280 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	F2RL3	Q96RI0	385 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	CD244	Q9BZW8	370 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	RAB17	Q9H0T7	212 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	ALG9	Q9H6U8	611 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	NMRAL1	Q9HBL8	299 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	CHST11	Q9NPF2	352 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	ADAP2	Q9NPF8	381 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	TINAG	Q9UJW2	476 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	ZNF835	Q9Y2P0	537 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	KLF13	Q9Y2Y9	288 aa	Predicted RBP	11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	CLCA3P	Q9Y6N3	262 aa		11.62	□□□□□ -0.55
SREBF1-215	ENST00000487401	ENO4	A6NNW6	628 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	SUPT3H	B4E1H0	165 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	ZNF500	O60304	480 aa	Predicted RBP	11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	CTNS	O60931	367 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	SUPT3H	O75486	399 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	ITGA10	O75578	1167 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	FAM155B	O75949	473 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	TNNI3	P19429	210 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	TFEB	P19484	476 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	CERS1	P27544	350 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	PPP2R1B	P30154	601 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	MSH2	P43246	934 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	MAGEA4	P43358	317 aa		11.61	□□□□□ -0.55
SREBF1-215	ENST00000487401	KCNC1	P48547	511 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 25 ms