RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ZCCHC7Q8N3Z6 543 aaKnown RBP14.97□□□□□ -0.01
UPF3A-208ENST00000484246 TRPC4APQ8TEL6 797 aa14.97□□□□□ -0.01
UPF3A-208ENST00000484246 PPP4R1Q8TF05 950 aa14.97□□□□□ -0.01
UPF3A-208ENST00000484246 ZIM3Q96PE6 472 aa14.97□□□□□ -0.01
UPF3A-208ENST00000484246 SMC6Q96SB8 1091 aa14.97□□□□□ -0.01
UPF3A-208ENST00000484246 ZNF717Q9BY31 904 aaPredicted RBP14.97□□□□□ -0.01
UPF3A-208ENST00000484246 ZNF700Q9H0M5 742 aa14.97□□□□□ -0.01
UPF3A-208ENST00000484246 COPS7BQ9H9Q2 264 aaPredicted RBP14.97□□□□□ -0.01
UPF3A-208ENST00000484246 SSU72Q9NP77 194 aaKnown RBP14.97□□□□□ -0.01
UPF3A-208ENST00000484246 RIC8BQ9NVN3 520 aa14.97□□□□□ -0.01
UPF3A-208ENST00000484246 OXSMQ9NWU1 459 aa14.97□□□□□ -0.01
UPF3A-208ENST00000484246 C19orf25Q9UFG5 118 aaPredicted RBP14.97□□□□□ -0.01
UPF3A-208ENST00000484246 DAPP1Q9UN19 280 aa14.97□□□□□ -0.01
UPF3A-208ENST00000484246 MMACHCQ9Y4U1 282 aa14.97□□□□□ -0.01
UPF3A-208ENST00000484246 NBEAQ8NFP9 2946 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 IGHV1-45A0A0A0MS14 117 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 PSMD12O00232 456 aaPredicted RBP14.96□□□□□ -0.01
UPF3A-208ENST00000484246 PPP6CO00743 305 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 PLPP1O14494 284 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 TYROBPO43914 113 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 C1QL1O75973 258 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 TGFB1P01137 390 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 ENO1P06733 434 aaKnown RBP14.96□□□□□ -0.01
UPF3A-208ENST00000484246 CERS1P27544 350 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 RPS13P62277 151 aaKnown RBP14.96□□□□□ -0.01
UPF3A-208ENST00000484246 DDX39BQ13838 428 aaKnown RBP14.96□□□□□ -0.01
UPF3A-208ENST00000484246 MYBPC3Q14896 1274 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 PCLAFQ15004 111 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 PCOLCEQ15113 449 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 LIPMQ5VYY2 423 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 FRMD7Q6ZUT3 714 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 NDUFAF7Q7L592 441 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 HPS6Q86YV9 775 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 SCUBE1Q8IWY4 988 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 METTL21AQ8WXB1 218 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 RGMAQ96B86 450 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 PGM2Q96G03 612 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 ABHD17AQ96GS6 310 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 MTERF1Q99551 399 aaKnown RBP14.96□□□□□ -0.01
UPF3A-208ENST00000484246 SERPINI1Q99574 410 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 MESP1Q9BRJ9 268 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 IQCGQ9H095 443 aaKnown RBP14.96□□□□□ -0.01
UPF3A-208ENST00000484246 OR51B5Q9H339 312 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 BRF2Q9HAW0 419 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 ATP13A2Q9NQ11 1180 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 SNX6Q9UNH7 406 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 ACTL7BQ9Y614 415 aa14.96□□□□□ -0.01
UPF3A-208ENST00000484246 A0A0G2JN53 185 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 BLACEA4D250 179 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 CYR61O00622 381 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 RGS16O15492 202 aaPredicted RBP14.95□□□□□ -0.02
UPF3A-208ENST00000484246 CTIFO43310 598 aaKnown RBP14.95□□□□□ -0.02
UPF3A-208ENST00000484246 ESRRBO95718 433 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 HSD3B1P14060 373 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 HSD3B2P26439 372 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 ARL1P40616 181 aaPredicted RBP14.95□□□□□ -0.02
UPF3A-208ENST00000484246 SSR2P43308 183 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 LIM2P55344 173 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 IFT88Q13099 833 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 LACTB2Q53H82 288 aaPredicted RBP14.95□□□□□ -0.02
UPF3A-208ENST00000484246 VWA5B1Q5TIE3 1220 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 RIPOR1Q6ZS17 1223 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 ANKRD37Q7Z713 158 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 ZNF595Q8IYB9 648 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 GALNT16Q8N428 558 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 ACOT4Q8N9L9 421 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 FDCSPQ8NFU4 85 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 AGAP11Q8TF27 550 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 C8orf44Q96CB5 159 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 IMMP1LQ96LU5 166 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 SMAD5Q99717 465 aaKnown RBP14.95□□□□□ -0.02
UPF3A-208ENST00000484246 TRMOQ9BU70 441 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 TUBB6Q9BUF5 446 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 SLC25A23Q9BV35 468 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 RBCK1Q9BYM8 510 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 ELOVL6Q9H5J4 265 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 DDX31Q9H8H2 851 aaKnown RBP14.95□□□□□ -0.02
UPF3A-208ENST00000484246 PRDM9Q9NQV7 894 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 GPR83Q9NYM4 423 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 KCMF1Q9P0J7 381 aa14.95□□□□□ -0.02
UPF3A-208ENST00000484246 G3BP2Q9UN86 482 aaKnown RBP14.95□□□□□ -0.02
UPF3A-208ENST00000484246 NSG1A0A0A6YYJ2 146 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 TCRBV16S1A1N1A0A5B0 115 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 OR4F21O95013 312 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 ETHE1O95571 254 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 KRT6AP02538 564 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 KRT6BP04259 564 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 TSPAN8P19075 237 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 ETV4P43268 484 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 KRT6CP48668 564 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 CCL11P51671 97 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 PGDP52209 483 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 RAP1GDS1P52306 607 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 NAGLUP54802 743 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 HSD17B7P56937 341 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 AP2B1P63010 937 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 ASPHQ12797 758 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 ABRAXAS2Q15018 415 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 AP5B1Q2VPB7 878 aa14.94□□□□□ -0.02
UPF3A-208ENST00000484246 CEP85LQ5SZL2 805 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms