RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 XKR6Q5GH73 641 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 ZNF793Q6ZN11 406 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 LGI4Q8N135 537 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 KRT78Q8N1N4 520 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 SNX31Q8N9S9 440 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 TTLQ8NG68 377 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 UBTD2Q8WUN7 234 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 NXNL1Q96CM4 212 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 PTCD3Q96EY7 689 aaKnown RBP13.19□□□□□ -0.3
UPF3A-204ENST00000475218 SEC16BQ96JE7 1060 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 F2RL3Q96RI0 385 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 NPLQ9BXD5 320 aaPredicted RBP13.19□□□□□ -0.3
UPF3A-204ENST00000475218 REXO4Q9GZR2 422 aaKnown RBP13.19□□□□□ -0.3
UPF3A-204ENST00000475218 CNOT10Q9H9A5 744 aaKnown RBP13.19□□□□□ -0.3
UPF3A-204ENST00000475218 KLHL1Q9NR64 748 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 KCMF1Q9P0J7 381 aa13.19□□□□□ -0.3
UPF3A-204ENST00000475218 DCHS2Q6V1P9 2916 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 ASPDHA6ND91 283 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 CCNT2O60583 730 aaKnown RBP13.18□□□□□ -0.3
UPF3A-204ENST00000475218 ZG16O60844 167 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 KERAO60938 352 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 UNC5CO95185 931 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 MLF1P58340 268 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 PCDH1Q08174 1060 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 NAB1Q13506 487 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 TBCCQ15814 346 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 RPS19BP1Q86WX3 136 aaKnown RBP13.18□□□□□ -0.3
UPF3A-204ENST00000475218 SLC5A8Q8N695 610 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 FAM47BQ8NA70 645 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 DNAJB8Q8NHS0 232 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 KCTD4Q8WVF5 259 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 CCT6BQ92526 530 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 RELTQ969Z4 430 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 FRMD6Q96NE9 622 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 GPR78Q96P69 363 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 UTP23Q9BRU9 249 aaKnown RBP13.18□□□□□ -0.3
UPF3A-204ENST00000475218 CAPS2Q9BXY5 557 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 TRIM45Q9H8W5 580 aaPredicted RBP13.18□□□□□ -0.3
UPF3A-204ENST00000475218 NUDT4Q9NZJ9 180 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 PPIEQ9UNP9 301 aaKnown RBP13.18□□□□□ -0.3
UPF3A-204ENST00000475218 MMACHCQ9Y4U1 282 aa13.18□□□□□ -0.3
UPF3A-204ENST00000475218 ANKDD1BA6NHY2 528 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 LRRC14BA6NHZ5 514 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 TMEM200CA6NKL6 621 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 PSMD12O00232 456 aaPredicted RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 CLGNO14967 610 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 PRKNO60260 465 aaPredicted RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 LTA4HP09960 611 aaKnown RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 DCTP40126 519 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 LIM2P55344 173 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 RAB38P57729 211 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 CHIT1Q13231 466 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 RNFT1Q5M7Z0 435 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 GFRALQ6UXV0 394 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 LRRC70Q7Z2Q7 622 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 FJX1Q86VR8 437 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 SIAH3Q8IW03 269 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 RNF175Q8N4F7 328 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 NOA1Q8NC60 698 aaKnown RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 SUN3Q8TAQ9 357 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 STAG3L4Q8TBR4 150 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 ZNF473Q8WTR7 871 aaKnown RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 C16orf45Q96MC5 204 aaPredicted RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 EFCAB11Q9BUY7 163 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 MS4A8Q9BY19 250 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 NINJ2Q9NZG7 142 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 DMGDHQ9UI17 866 aaKnown RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 DAPP1Q9UN19 280 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 MYO7BQ6PIF6 2116 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 ADGRG4Q8IZF6 3080 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 RTCAO00442 366 aaKnown RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 MYO1DO94832 1006 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 CRYABP02511 175 aaKnown RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 ALDOAP04075 364 aaKnown RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 C2P06681 752 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 SP1P08047 785 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 CRABP2P29373 138 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 ECHS1P30084 290 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 ZRSR2Q15696 482 aaKnown RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 MROH9Q5TGP6 573 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 C8orf74Q6P047 294 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 RAPH1Q70E73 1250 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 CHERPQ8IWX8 916 aaKnown RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 LAS2Q8IYD9 372 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 MRRFQ96E11 262 aaKnown RBP13.17□□□□□ -0.3
UPF3A-204ENST00000475218 FAR2Q96K12 515 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 SERINC2Q96SA4 455 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 NMRAL1Q9HBL8 299 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 SNX15Q9NRS6 342 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 LRFN1Q9P244 771 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 SEC14L3Q9UDX4 400 aa13.17□□□□□ -0.3
UPF3A-204ENST00000475218 MYOCOSA0A1B0GUC4 107 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 SUPT3HB4E1H0 165 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 B3GALT2O43825 422 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 SUPT3HO75486 399 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 TRHRP34981 398 aaPredicted RBP13.16□□□□□ -0.3
UPF3A-204ENST00000475218 MSH2P43246 934 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 HSD17B7P56937 341 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 TAS2R50P59544 299 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 IRF8Q02556 426 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms