RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 XKR6Q5GH73 641 aa17.36■□□□□ 0.37
COL7A1-209ENST00000474432 FJX1Q86VR8 437 aa17.36■□□□□ 0.37
COL7A1-209ENST00000474432 CENPLQ8N0S6 344 aaPredicted RBP17.36■□□□□ 0.37
COL7A1-209ENST00000474432 SNX31Q8N9S9 440 aa17.36■□□□□ 0.37
COL7A1-209ENST00000474432 CCT6BQ92526 530 aa17.36■□□□□ 0.37
COL7A1-209ENST00000474432 PTCD3Q96EY7 689 aaKnown RBP17.36■□□□□ 0.37
COL7A1-209ENST00000474432 LRRC1Q9BTT6 524 aa17.36■□□□□ 0.37
COL7A1-209ENST00000474432 KLHL1Q9NR64 748 aa17.36■□□□□ 0.37
COL7A1-209ENST00000474432 RNF112Q9ULX5 631 aa17.36■□□□□ 0.37
COL7A1-209ENST00000474432 PPIEQ9UNP9 301 aaKnown RBP17.36■□□□□ 0.37
COL7A1-209ENST00000474432 PCNX1Q96RV3 2341 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 A0A1B0GUH1 482 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 PSMD12O00232 456 aaPredicted RBP17.35■□□□□ 0.37
COL7A1-209ENST00000474432 CLGNO14967 610 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 SP1P08047 785 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 STX2P32856 288 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 PLA2G16P53816 162 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 RAB38P57729 211 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 TAS2R50P59544 299 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 PCDH1Q08174 1060 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 CHIT1Q13231 466 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 TBCCQ15814 346 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 STAG3L4Q8TBR4 150 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 EXT2Q93063 718 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 NXNL1Q96CM4 212 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 FAR2Q96K12 515 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 FRMD6Q96NE9 622 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 F2RL3Q96RI0 385 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 CSF3RQ99062 836 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 EFCAB11Q9BUY7 163 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 REXO4Q9GZR2 422 aaKnown RBP17.35■□□□□ 0.37
COL7A1-209ENST00000474432 KCMF1Q9P0J7 381 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 SEC14L3Q9UDX4 400 aa17.35■□□□□ 0.37
COL7A1-209ENST00000474432 ANKDD1BA6NHY2 528 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 UBXN8O00124 270 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 CCNT2O60583 730 aaKnown RBP17.34■□□□□ 0.37
COL7A1-209ENST00000474432 KERAO60938 352 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 MYBL2P10244 700 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 CERS1P27544 350 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 CRABP2P29373 138 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 TRHRP34981 398 aaPredicted RBP17.34■□□□□ 0.37
COL7A1-209ENST00000474432 LIM2P55344 173 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 HSD17B7P56937 341 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 IRF9Q00978 393 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 NAB1Q13506 487 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 SLMAPQ14BN4 828 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 SLC25A25Q6KCM7 469 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 ZNF793Q6ZN11 406 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 LRRC70Q7Z2Q7 622 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 GALNTL5Q7Z4T8 443 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 SIAH3Q8IW03 269 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 FAM47BQ8NA70 645 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 B3GNT7Q8NFL0 401 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 ZNF473Q8WTR7 871 aaKnown RBP17.34■□□□□ 0.37
COL7A1-209ENST00000474432 UBTD2Q8WUN7 234 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 KCTD4Q8WVF5 259 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 SERINC2Q96SA4 455 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 MS4A8Q9BY19 250 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 NMRAL1Q9HBL8 299 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 PRTFDC1Q9NRG1 225 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 NUDT4Q9NZJ9 180 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 LRFN1Q9P244 771 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 DAPP1Q9UN19 280 aa17.34■□□□□ 0.37
COL7A1-209ENST00000474432 GTF3C1Q12789 2109 aa17.33■□□□□ 0.37
COL7A1-209ENST00000474432 CDK2AP1O14519 115 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 B3GALT2O43825 422 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 PRKNO60260 465 aaPredicted RBP17.33■□□□□ 0.36
COL7A1-209ENST00000474432 LTA4HP09960 611 aaKnown RBP17.33■□□□□ 0.36
COL7A1-209ENST00000474432 CD46P15529 392 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 MTTPP55157 894 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 PER3P56645 1201 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 OC90Q02509 493 aaPredicted RBP17.33■□□□□ 0.36
COL7A1-209ENST00000474432 IRF8Q02556 426 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 BMPR2Q13873 1038 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 TERF2Q15554 542 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 RNFT1Q5M7Z0 435 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 TRIM40Q6P9F5 258 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 RAPH1Q70E73 1250 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 CHERPQ8IWX8 916 aaKnown RBP17.33■□□□□ 0.36
COL7A1-209ENST00000474432 LAS2Q8IYD9 372 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 GPR78Q96P69 363 aa17.33■□□□□ 0.36
COL7A1-209ENST00000474432 NCOA6Q14686 2063 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-209ENST00000474432 TMEM200CA6NKL6 621 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 NME2P1O60361 137 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 MYO1DO94832 1006 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 C2P06681 752 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 NME2P22392 152 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 EEF1DP29692 281 aaKnown RBP17.32■□□□□ 0.36
COL7A1-209ENST00000474432 CA7P43166 264 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 HLCSP50747 726 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 LAPTM5Q13571 262 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-209ENST00000474432 TBC1D1Q86TI0 1168 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-209ENST00000474432 ZNF595Q8IYB9 648 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 TMEM178AQ8NBL3 297 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 ARMC2Q8NEN0 867 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 THAP3Q8WTV1 239 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-209ENST00000474432 GPR137Q96N19 417 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 DEFB126Q9BYW3 111 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 TSPAN10Q9H1Z9 355 aaPredicted RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms