RNA–Protein interactions for RNA: ENST00000473961.5

BRCA1-212, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 958 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-212ENST00000473961 RALAP11233 206 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 HOXB6P17509 224 aaKnown RBP3.78□□□□□ -1.8
BRCA1-212ENST00000473961 ACKR3P25106 362 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 MARK3P27448 753 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 CAMLGP49069 296 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 NANOS2P60321 138 aaKnown RBP3.78□□□□□ -1.8
BRCA1-212ENST00000473961 IRX3P78415 501 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-212ENST00000473961 PHEXP78562 749 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 HSPA14Q0VDF9 509 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 CNTN1Q12860 1018 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 NME3Q13232 169 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 SCGB2A2Q13296 93 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 GK2Q14410 553 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-212ENST00000473961 SPHARQ15513 63 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 XKR3Q5GH77 459 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 HERC4Q5GLZ8 1057 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-212ENST00000473961 ATP1A1-AS1Q5TC04 95 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 FAM72AQ5TYM5 149 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 C1orf189Q5VU69 101 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 LYPLAL1Q5VWZ2 237 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 PRAMEF7Q5VXH5 474 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 NKAIN2Q5VXU1 208 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 HIST2H2AA3Q6FI13 130 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 FAM72DQ6L9T8 149 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 TMEM207Q6UWW9 146 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 ABRAXAS1Q6UWZ7 409 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 WDR88Q6ZMY6 472 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 C17orf107Q6ZR85 190 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 CDHR3Q6ZTQ4 885 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 MCM10Q7L590 875 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 SLC26A9Q7LBE3 791 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 TRMT1LQ7Z2T5 733 aaKnown RBP3.78□□□□□ -1.8
BRCA1-212ENST00000473961 FAM72BQ86X60 149 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 TEX26Q8N6G2 289 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 TCEANCQ8N8B7 351 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 COLGALT1Q8NBJ5 622 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 KLHDC9Q8NEP7 349 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 OR6M1Q8NGM8 313 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 OR10G8Q8NGN5 311 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 OR1L3Q8NH93 324 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 UBTD2Q8WUN7 234 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 ARHGAP45Q92619 1136 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 CASP10Q92851 521 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 GLYATL1Q969I3 302 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 SYAP1Q96A49 352 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-212ENST00000473961 ZBTB9Q96C00 473 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 NXPE2Q96DL1 559 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 BPIFA2Q96DR5 249 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 LURAP1Q96LR2 239 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 S1PR3Q99500 378 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 THAP2Q9H0W7 228 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 S100A14Q9HCY8 104 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 ZNF334Q9HCZ1 680 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-212ENST00000473961 SIX2Q9NPC8 291 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 NGBQ9NPG2 151 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 ZFP57Q9NU63 452 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 INTS9Q9NV88 658 aaKnown RBP3.78□□□□□ -1.8
BRCA1-212ENST00000473961 ZNF319Q9P2F9 582 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 FAM153AQ9UHL3 310 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 CCDC88BA6NC98 1476 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 SOGA1O94964 1423 aa3.78□□□□□ -1.8
BRCA1-212ENST00000473961 ATP8B3O60423 1300 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 TRBV4-1A0A0J9YWV2 114 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 RGSL1A5PLK6 1076 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 SMIM1B2RUZ4 78 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 ZNF732B4DXR9 585 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 P2RY10O00398 339 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 ARPC1BO15143 372 aaKnown RBP3.77□□□□□ -1.81
BRCA1-212ENST00000473961 CLDN3O15551 220 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 CDC123O75794 336 aaPredicted RBP3.77□□□□□ -1.81
BRCA1-212ENST00000473961 STBD1O95210 358 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 SEC24AO95486 1093 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 NTN1O95631 604 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 NUDT17P0C025 328 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 SKILP12757 684 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 MSNP26038 577 aaKnown RBP3.77□□□□□ -1.81
BRCA1-212ENST00000473961 CHRNA3P32297 505 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 CCR4P51679 360 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 FOXG1P55316 489 aaPredicted RBP3.77□□□□□ -1.81
BRCA1-212ENST00000473961 CDKL1Q00532 357 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 PRKCEQ02156 737 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 SP3Q02447 781 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 CCDC173Q0VFZ6 552 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 DRP2Q13474 957 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 GPR50Q13585 617 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 P2RY6Q15077 328 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 TRADDQ15628 312 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 ZNF672Q499Z4 452 aaPredicted RBP3.77□□□□□ -1.81
BRCA1-212ENST00000473961 ZNF585BQ52M93 769 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 MPPE1Q53F39 396 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 TAF1BQ53T94 588 aaPredicted RBP3.77□□□□□ -1.81
BRCA1-212ENST00000473961 ZNF790Q6PG37 636 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 ARSKQ6UWY0 536 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 CEACAM20Q6UY09 585 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 TMEM64Q6YI46 380 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 LEKR1Q6ZMV7 388 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 SYVN1Q86TM6 617 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 SAMD14Q8IZD0 417 aaPredicted RBP3.77□□□□□ -1.81
BRCA1-212ENST00000473961 RAB42Q8N4Z0 105 aa3.77□□□□□ -1.81
BRCA1-212ENST00000473961 OLIG1Q8TAK6 271 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms