RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 DNAJC11Q9NVH1 559 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 SUCOQ9UBS9 1254 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 TINAGQ9UJW2 476 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 ZNF223Q9UK11 482 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 ZNF490Q9ULM2 529 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 ZNF835Q9Y2P0 537 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 ASB1Q9Y576 335 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 ARHGAP10A1A4S6 786 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 NPIPA5E9PKD4 350 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 H2AFYO75367 372 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 MYO1DO94832 1006 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 STMN1P16949 149 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 GP5P40197 560 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 CYB561P49447 251 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 PLA2G16P53816 162 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 ATP6V0D1P61421 351 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 ART3Q13508 389 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 C3AR1Q16581 482 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 Q6ZPB1 254 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 CHERPQ8IWX8 916 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 KRT78Q8N1N4 520 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 FAM47BQ8NA70 645 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 B3GNT7Q8NFL0 401 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 OR2L5Q8NG80 312 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 MAGED4Q96JG8 741 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 CSF3RQ99062 836 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 CAPS2Q9BXY5 557 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 REXO4Q9GZR2 422 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 CNOT10Q9H9A5 744 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 TXNDC16Q9P2K2 825 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 PTBP2Q9UKA9 531 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 NPIPA1Q9UND3 350 aa17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 PPIEQ9UNP9 301 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 KLF2Q9Y5W3 355 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-206ENST00000473405 TRBV11-1A0A0K0K1C0 115 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 HNRNPRO43390 633 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 STK16O75716 305 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 FAM155BO75949 473 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 CERS1P27544 350 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 KCNC1P48547 511 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 HLCSP50747 726 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 HSD17B7P56937 341 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 RAB38P57729 211 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 RAB10P61026 200 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 ADORA2A-AS1P86434 159 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 DOC2AQ14183 400 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 MAPKAPK3Q16644 382 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 PDK4Q16654 411 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 KRTCAP3Q53RY4 240 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 SP5Q6BEB4 398 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 SULT1C3Q6IMI6 304 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 MTFR2Q6P444 385 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 ABHD17CQ6PCB6 329 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 C3orf62Q6ZUJ4 267 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 MAATS1Q7Z4T9 603 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 MRGPRGQ86SM5 289 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 ZNF808Q8N4W9 903 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 CPSF7Q8N684 471 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 SNX31Q8N9S9 440 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 KIAA1191Q96A73 305 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 PTCD3Q96EY7 689 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 DEFB126Q9BYW3 111 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 PHACTR1Q9C0D0 580 aa17.54■□□□□ 0.4
CCDC88B-206ENST00000473405 ANKDD1BA6NHY2 528 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 CYR61O00622 381 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 CLGNO14967 610 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 B3GALT2O43825 422 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 MLYCDO95822 493 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 GSTA2P09210 222 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 SLC35E2BP0CK96 405 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 ZNF24P17028 368 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 GPR143P51810 404 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 DLG1Q12959 904 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 E2F2Q14209 437 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 KBTBD12Q3ZCT8 623 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 XKR6Q5GH73 641 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 TRIM40Q6P9F5 258 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 RPTNQ6XPR3 784 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 BNC2Q6ZN30 1099 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 CMC1Q7Z7K0 106 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 FAM98AQ8NCA5 519 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 FBXO25Q8TCJ0 367 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 ADAMTS18Q8TE60 1221 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 EFCAB11Q9BUY7 163 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 PRTFDC1Q9NRG1 225 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 PNO1Q9NRX1 252 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 CD274Q9NZQ7 290 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 RNF112Q9ULX5 631 aa17.53■□□□□ 0.4
CCDC88B-206ENST00000473405 A0A088AWK7 358 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 FCHO1O14526 889 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 ZNHIT1O43257 154 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 ASNA1O43681 348 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 PRKNO60260 465 aaPredicted RBP17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 ZNF10P21506 573 aaPredicted RBP17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 CLCN2P51788 898 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 CASP6P55212 293 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 LIM2P55344 173 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 HSF1Q00613 529 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 SLC13A2Q13183 592 aa17.52■□□□□ 0.4
CCDC88B-206ENST00000473405 TRADDQ15628 312 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms