RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 A0A0G2JK05 382 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 LOC102723532A0A0G2JNH3 316 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 GOLGA8QA0A0J9YX86 632 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 KANSL1LA0AUZ9 987 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 GXYLT2A0PJZ3 443 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 MACROD2A1Z1Q3 448 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 CCDC162PA2VCL2 907 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 OR6C70A6NIJ9 312 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 MBD3L5A6NJ08 208 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 PDZK1P1A8MUH7 402 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 MAGEB17A8MXT2 336 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 H3BQ06 376 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 MAGEB2O15479 319 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 RNF13O43567 381 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 DFNA5O60443 496 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 NDUFS3O75489 264 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 CIAO1O76071 339 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 MOCS3O95396 460 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 NSA2O95478 260 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 NDUFB10O96000 172 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 IFNA14P01570 189 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 MBP02144 154 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 IL6P05231 212 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 LINGO3P0C6S8 592 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 PLA2G4BP0C869 781 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 UGT1A6P19224 532 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 ZNF10P21506 573 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 DUSP1P28562 367 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 CD80P33681 288 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 DLSTP36957 453 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 IGHMBP2P38935 993 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 NAA10P41227 235 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 GRIA1P42261 906 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 RANBP1P43487 201 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 CASP4P49662 377 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 GMPSP49915 693 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 CNN1P51911 297 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 CCNG1P51959 295 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 GALCP54803 685 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 CSTF1Q05048 431 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 GOLGA8FQ08AF8 430 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 SMARCB1Q12824 385 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 PPP1R8Q12972 351 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 GCKRQ14397 625 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 PTPRCAPQ14761 206 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 UGCGQ16739 394 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 PNLIPRP3Q17RR3 467 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 CDKL4Q5MAI5 379 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 EOGTQ5NDL2 527 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 PDZK1Q5T2W1 519 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 WSCD1Q658N2 575 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 TXNRD3NBQ6F5E7 133 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 NCAPH2Q6IBW4 605 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 NEPROQ6NW34 567 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 FBXO46Q6PJ61 603 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 IL20RBQ6UXL0 311 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 TMIGD1Q6UXZ0 262 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 Q6ZTC4 211 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 C18orf65Q6ZTR6 163 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 ADIPOR2Q86V24 386 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 VRK2Q86Y07 508 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 PLCZ1Q86YW0 608 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 FAM219AQ8IW50 185 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 C4orf19Q8IY42 314 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 UBQLNLQ8IYU4 475 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 OR4N4Q8N0Y3 316 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 FBXL14Q8N1E6 418 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 BCORP1Q8N888 145 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 C11orf65Q8NCR3 313 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 ZNF397Q8NF99 534 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 OR5T1Q8NG75 326 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 GPX8Q8TED1 209 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 ABHD5Q8WTS1 349 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 PIGBQ92521 554 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 CNOT9Q92600 299 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 RAD51AP1Q96B01 352 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 ULK4Q96C45 1275 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 P2RY11Q96G91 374 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 REXO5Q96IC2 774 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 RIT2Q99578 217 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 SPAG8Q99932 426 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 FAM213AQ9BRX8 229 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 CNPY3Q9BT09 278 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 IDI2Q9BXS1 227 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 ANKRD60Q9BZ19 345 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 NDEL1Q9GZM8 345 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 DERL2Q9GZP9 239 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 CLPBQ9H078 707 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 RBM38Q9H0Z9 239 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 NAPBQ9H115 298 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 DHX33Q9H6R0 707 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 GEMIN7Q9H840 131 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 APMAPQ9HDC9 416 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 C20orf141Q9NUB4 165 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 RBAKQ9NYW8 714 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 GCNT4Q9P109 453 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 PEMTQ9UBM1 199 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 TBC1D24Q9ULP9 559 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 ZNF148Q9UQR1 794 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 RHBDD3Q9Y3P4 386 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms