RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 STK17BO94768 372 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 KLHL18O94889 574 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 GBAP04062 536 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 FAM87AP0C7U9 286 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 OR1D4P47884 311 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 OLR1P78380 273 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 ZNF33BQ06732 778 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 CUL3Q13618 768 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 HERC3Q15034 1050 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 AP5B1Q2VPB7 878 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 ADPRMQ3LIE5 342 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 GARNL3Q5VVW2 1013 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 ABHD17CQ6PCB6 329 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 MAVSQ7Z434 540 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 PDSS2Q86YH6 399 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 ARHGEF39Q8N4T4 335 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 C1orf52Q8N6N3 182 aaKnown RBP16.31■□□□□ 0.2
LIME1-202ENST00000444951 GALNT6Q8NCL4 622 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.31■□□□□ 0.2
LIME1-202ENST00000444951 TUBGCP3Q96CW5 907 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 CHMP6Q96FZ7 201 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 APIPQ96GX9 242 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 TEFMQ96QE5 360 aaKnown RBP16.31■□□□□ 0.2
LIME1-202ENST00000444951 ZPBPQ9BS86 351 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 YIPF2Q9BWQ6 316 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 WDR55Q9H6Y2 383 aaPredicted RBP16.31■□□□□ 0.2
LIME1-202ENST00000444951 RIC8BQ9NVN3 520 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 DCTN4Q9UJW0 460 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 SLC22A7Q9Y694 548 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 A0A1B0GX78 115 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.3■□□□□ 0.2
LIME1-202ENST00000444951 FOXS1O43638 330 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 RDH16O75452 317 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 KLK1P06870 262 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 HBQ1P09105 142 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 CERS1P27544 350 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 EPHA3P29320 983 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 AVPR1BP47901 424 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 AQP5P55064 265 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 ACSM2AQ08AH3 577 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 TBR1Q16650 682 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 SLC9B1Q4ZJI4 515 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 YOD1Q5VVQ6 348 aaPredicted RBP16.3■□□□□ 0.2
LIME1-202ENST00000444951 ACSM2BQ68CK6 577 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 NXNQ6DKJ4 435 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 OR4C11Q6IEV9 310 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 RHBDD2Q6NTF9 364 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 Q6ZSR9 355 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 AMER3Q8N944 861 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 SRFBP1Q8NEF9 429 aaKnown RBP16.3■□□□□ 0.2
LIME1-202ENST00000444951 RFWD2Q8NHY2 731 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 COL26A1Q96A83 441 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 ZNF317Q96PQ6 595 aaPredicted RBP16.3■□□□□ 0.2
LIME1-202ENST00000444951 KCNC2Q96PR1 638 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 TBCDQ9BTW9 1192 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 EBPLQ9BY08 206 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 TRIM4Q9C037 500 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 LRTM1Q9HBL6 345 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 PSD3Q9NYI0 1048 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 AHSPQ9NZD4 102 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 HCN3Q9P1Z3 774 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 PPT2Q9UMR5 302 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 CCL27Q9Y4X3 112 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 PCDHGA3Q9Y5H0 932 aa16.3■□□□□ 0.2
LIME1-202ENST00000444951 SERTM1A2A2V5 107 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 SDHDO14521 159 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 GALR3O60755 368 aaPredicted RBP16.29■□□□□ 0.2
LIME1-202ENST00000444951 DNAJB6O75190 326 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 EEDO75530 441 aaKnown RBP16.29■□□□□ 0.2
LIME1-202ENST00000444951 RSL1D1O76021 490 aaKnown RBP16.29■□□□□ 0.2
LIME1-202ENST00000444951 SMIM10L1P0DMW3 83 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 TROVE2P10155 538 aaKnown RBP eCLIP16.29■□□□□ 0.2
LIME1-202ENST00000444951 SPTBP11277 2137 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 ATP5A1P25705 553 aaKnown RBP16.29■□□□□ 0.2
LIME1-202ENST00000444951 CD82P27701 267 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 GCGRP47871 477 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 HK2P52789 917 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 EMP3P54852 163 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 RPL38P63173 70 aaKnown RBP16.29■□□□□ 0.2
LIME1-202ENST00000444951 MAT1AQ00266 395 aaKnown RBP16.29■□□□□ 0.2
LIME1-202ENST00000444951 TBL3Q12788 808 aaKnown RBP16.29■□□□□ 0.2
LIME1-202ENST00000444951 ATP6AP1LQ52LC2 224 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 XKR7Q5GH72 579 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 ZNF793Q6ZN11 406 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 PRICKLE2Q7Z3G6 844 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 COMMD6Q7Z4G1 85 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 HOMEZQ8IX15 550 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 METTL4Q8N3J2 472 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 OR5T3Q8NGG3 340 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 CHTF18Q8WVB6 975 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 MR1Q95460 341 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 NKD1Q969G9 470 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 SMIM10Q96HG1 83 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 CCT7Q99832 543 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 TRIM55Q9BYV6 548 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 B3GNT4Q9C0J1 378 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 AKTIPQ9H8T0 292 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 MEAF6Q9HAF1 191 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 LHX9Q9NQ69 397 aa16.29■□□□□ 0.2
LIME1-202ENST00000444951 PRDM7Q9NQW5 492 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms